Package picard.vcf

Class AccumulateVariantCallingMetrics


  • @DocumentedFeature
    public class AccumulateVariantCallingMetrics
    extends CommandLineProgram
    Combines multiple Variant Calling Metrics files into a single file.
    • Field Detail

      • INPUT

        @Argument(shortName="I",
                  doc="Paths (except for the file extensions) of Variant Calling Metrics files to read and merge.",
                  minElements=1)
        public List<File> INPUT
      • OUTPUT

        @Argument(shortName="O",
                  doc="Path (except for the file extension) of output metrics files to write.")
        public File OUTPUT
    • Constructor Detail

      • AccumulateVariantCallingMetrics

        public AccumulateVariantCallingMetrics()
    • Method Detail

      • doWork

        protected int doWork()
        Description copied from class: CommandLineProgram
        Do the work after command line has been parsed. RuntimeException may be thrown by this method, and are reported appropriately.
        Specified by:
        doWork in class CommandLineProgram
        Returns:
        program exit status.