Class ConvertHaplotypeDatabaseToVcf

    • Field Detail

      • INPUT

        @Argument(doc="Haplotype database to be converted to VCF.",
                  shortName="I")
        public File INPUT
      • OUTPUT

        @Argument(doc="Where to write converted haplotype database VCF.",
                  shortName="O")
        public File OUTPUT
    • Constructor Detail

      • ConvertHaplotypeDatabaseToVcf

        public ConvertHaplotypeDatabaseToVcf()
    • Method Detail

      • doWork

        protected int doWork()
        Description copied from class: CommandLineProgram
        Do the work after command line has been parsed. RuntimeException may be thrown by this method, and are reported appropriately.
        Specified by:
        doWork in class CommandLineProgram
        Returns:
        program exit status.