Class QuatSuperpositionScorer


  • public class QuatSuperpositionScorer
    extends java.lang.Object
    Author:
    Peter
    • Method Summary

      All Methods Static Methods Concrete Methods 
      Modifier and Type Method Description
      static QuatSymmetryScores calcScores​(QuatSymmetrySubunits subunits, javax.vecmath.Matrix4d transformation, java.util.List<java.lang.Integer> permutation)
      Returns minimum, mean, and maximum RMSD and TM-Score for two superimposed sets of subunits TM score: Yang Zhang and Jeffrey Skolnick, PROTEINS: Structure, Function, and Bioinformatics 57:702–710 (2004)
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • QuatSuperpositionScorer

        public QuatSuperpositionScorer()
    • Method Detail

      • calcScores

        public static QuatSymmetryScores calcScores​(QuatSymmetrySubunits subunits,
                                                    javax.vecmath.Matrix4d transformation,
                                                    java.util.List<java.lang.Integer> permutation)
        Returns minimum, mean, and maximum RMSD and TM-Score for two superimposed sets of subunits TM score: Yang Zhang and Jeffrey Skolnick, PROTEINS: Structure, Function, and Bioinformatics 57:702–710 (2004)
        Parameters:
        subunits - subunits to be scored
        transformation - transformation matrix
        permutations - permutation that determines which subunits are superposed
        Returns: