Uses of Class
org.forester.phylogeny.data.Accession
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Packages that use Accession Package Description org.forester.archaeopteryx org.forester.phylogeny.data org.forester.util org.forester.ws.seqdb -
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Uses of Accession in org.forester.archaeopteryx
Method parameters in org.forester.archaeopteryx with type arguments of type Accession Modifier and Type Method Description static java.util.List<java.lang.String>
TreePanelUtil. createUrisForPdbWeb(PhylogenyNode node, java.util.List<Accession> pdb_accs, Configuration configuration, TreePanel treePanel)
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Uses of Accession in org.forester.phylogeny.data
Methods in org.forester.phylogeny.data that return Accession Modifier and Type Method Description Accession
Sequence. getAccession()
Methods in org.forester.phylogeny.data that return types with arguments of type Accession Modifier and Type Method Description java.util.SortedSet<Accession>
Sequence. getCrossReferences()
Methods in org.forester.phylogeny.data with parameters of type Accession Modifier and Type Method Description void
Sequence. addCrossReference(Accession cross_reference)
int
Accession. compareTo(Accession o)
void
Sequence. setAccession(Accession accession)
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Uses of Accession in org.forester.util
Methods in org.forester.util that return Accession Modifier and Type Method Description static Accession
SequenceAccessionTools. obtainAccessorFromDataFields(PhylogenyNode n)
static Accession
SequenceAccessionTools. obtainFromSeqAccession(PhylogenyNode n)
static Accession
SequenceAccessionTools. parseAccessorFromString(java.lang.String s)
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Uses of Accession in org.forester.ws.seqdb
Methods in org.forester.ws.seqdb that return Accession Modifier and Type Method Description static Accession
SequenceDbWsTools. obtainSeqAccession(PhylogenyNode node)
Methods in org.forester.ws.seqdb that return types with arguments of type Accession Modifier and Type Method Description java.util.SortedSet<Accession>
EbiDbEntry. getCrossReferences()
java.util.SortedSet<Accession>
SequenceDatabaseEntry. getCrossReferences()
java.util.SortedSet<Accession>
UniProtEntry. getCrossReferences()
Methods in org.forester.ws.seqdb with parameters of type Accession Modifier and Type Method Description static SequenceDatabaseEntry
SequenceDbWsTools. obtainEmblEntry(Accession acc)
static SequenceDatabaseEntry
SequenceDbWsTools. obtainEmblEntry(Accession acc, int max_lines_to_return)
static SequenceDatabaseEntry
SequenceDbWsTools. obtainRefSeqEntryFromEmbl(Accession acc)
static SequenceDatabaseEntry
SequenceDbWsTools. obtainRefSeqEntryFromEmbl(Accession acc, int max_lines_to_return)
static java.util.List<java.lang.String>
SequenceDbWsTools. queryEmblDb(Accession acc, int max_lines_to_return)
static java.util.List<java.lang.String>
SequenceDbWsTools. queryEmblDbForRefSeqEntry(Accession id, int max_lines_to_return)
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