Package org.forester.phylogeny.data
Class BranchWidth
- java.lang.Object
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- org.forester.phylogeny.data.BranchWidth
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- All Implemented Interfaces:
PhylogenyData
public class BranchWidth extends java.lang.Object implements PhylogenyData
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Field Summary
Fields Modifier and Type Field Description static double
BRANCH_WIDTH_DEFAULT_VALUE
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Constructor Summary
Constructors Constructor Description BranchWidth()
BranchWidth(double value)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description java.lang.StringBuffer
asSimpleText()
java.lang.StringBuffer
asText()
PhylogenyData
copy()
Creates a new PhylogenyData object with identical values as this PhylogenyData.double
getValue()
boolean
isEqual(PhylogenyData data)
Compares this PhylogenyData to PhylogenyData data.java.lang.StringBuffer
toNHX()
void
toPhyloXML(java.io.Writer w, int level, java.lang.String indentation)
Writes a phyloXML representation of this phylogeny data.java.lang.String
toString()
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Field Detail
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BRANCH_WIDTH_DEFAULT_VALUE
public static final double BRANCH_WIDTH_DEFAULT_VALUE
- See Also:
- Constant Field Values
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Method Detail
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asSimpleText
public java.lang.StringBuffer asSimpleText()
- Specified by:
asSimpleText
in interfacePhylogenyData
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asText
public java.lang.StringBuffer asText()
- Specified by:
asText
in interfacePhylogenyData
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copy
public PhylogenyData copy()
Description copied from interface:PhylogenyData
Creates a new PhylogenyData object with identical values as this PhylogenyData. This ~should~ return a deep copy, but not there yet.- Specified by:
copy
in interfacePhylogenyData
- Returns:
- a ~deep~ copy of this PhylogenyData
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getValue
public double getValue()
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isEqual
public boolean isEqual(PhylogenyData data)
Description copied from interface:PhylogenyData
Compares this PhylogenyData to PhylogenyData data. In general, this should return true if and only if all fiels are exactly identical.- Specified by:
isEqual
in interfacePhylogenyData
- Returns:
- in general, true if and only if all fiels are exactly identical, false otherwise
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toNHX
public java.lang.StringBuffer toNHX()
- Specified by:
toNHX
in interfacePhylogenyData
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toPhyloXML
public void toPhyloXML(java.io.Writer w, int level, java.lang.String indentation) throws java.io.IOException
Description copied from interface:PhylogenyData
Writes a phyloXML representation of this phylogeny data.- Specified by:
toPhyloXML
in interfacePhylogenyData
- Throws:
java.io.IOException
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toString
public java.lang.String toString()
- Overrides:
toString
in classjava.lang.Object
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