Class PhyloXmlUtil


  • public final class PhyloXmlUtil
    extends java.lang.Object
    • Field Detail

      • SEQUENCE_SYMBOL_PATTERN

        public static final java.util.regex.Pattern SEQUENCE_SYMBOL_PATTERN
      • TAXOMONY_CODE_PATTERN

        public static final java.util.regex.Pattern TAXOMONY_CODE_PATTERN
      • LIT_REF_DOI_PATTERN

        public static final java.util.regex.Pattern LIT_REF_DOI_PATTERN
      • SEQUENCE_TYPES

        public static final java.util.Set<java.lang.String> SEQUENCE_TYPES
      • TAXONOMY_RANKS_LIST

        public static final java.util.List<java.lang.String> TAXONOMY_RANKS_LIST
      • TAXONOMY_RANKS_SET

        public static final java.util.Set<java.lang.String> TAXONOMY_RANKS_SET
      • ROUNDING_DIGITS_FOR_PHYLOXML_DOUBLE_OUTPUT

        public static final int ROUNDING_DIGITS_FOR_PHYLOXML_DOUBLE_OUTPUT
        See Also:
        Constant Field Values
      • VECTOR_PROPERTY_REF

        public static final java.lang.String VECTOR_PROPERTY_REF
        See Also:
        Constant Field Values
      • VECTOR_PROPERTY_TYPE

        public static final java.lang.String VECTOR_PROPERTY_TYPE
        See Also:
        Constant Field Values
      • UNIPROT_TAX_PROVIDER

        public static final java.lang.String UNIPROT_TAX_PROVIDER
        See Also:
        Constant Field Values
      • SEQ_TYPE_PROTEIN

        public static final java.lang.String SEQ_TYPE_PROTEIN
        See Also:
        Constant Field Values
    • Constructor Detail

      • PhyloXmlUtil

        public PhyloXmlUtil()