Package org.forester.msa_compactor
Class MsaProperties
- java.lang.Object
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- org.forester.msa_compactor.MsaProperties
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public final class MsaProperties extends java.lang.Object
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Constructor Summary
Constructors Constructor Description MsaProperties(int number_of_sequences, int length, double gap_ratio, double entropy7, double entropy21, double avg_number_of_gaps, java.lang.String removed_seq)
MsaProperties(Msa msa, java.lang.String removed_seq, boolean calculate_normalized_shannon_entropy)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description double
getAvgNumberOfGaps()
double
getEntropy21()
double
getEntropy7()
double
getGapRatio()
int
getLength()
int
getNumberOfSequences()
java.lang.String
getRemovedSeq()
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Constructor Detail
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MsaProperties
public MsaProperties(int number_of_sequences, int length, double gap_ratio, double entropy7, double entropy21, double avg_number_of_gaps, java.lang.String removed_seq)
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MsaProperties
public MsaProperties(Msa msa, java.lang.String removed_seq, boolean calculate_normalized_shannon_entropy)
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Method Detail
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getEntropy21
public final double getEntropy21()
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getEntropy7
public final double getEntropy7()
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getGapRatio
public final double getGapRatio()
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getAvgNumberOfGaps
public final double getAvgNumberOfGaps()
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getLength
public final int getLength()
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getNumberOfSequences
public final int getNumberOfSequences()
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getRemovedSeq
public final java.lang.String getRemovedSeq()
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