Package org.biojava.nbio.genome.homology
Class GFF3FromUniprotBlastHits
- java.lang.Object
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- org.biojava.nbio.genome.homology.GFF3FromUniprotBlastHits
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public class GFF3FromUniprotBlastHits extends java.lang.Object
- Author:
- Scooter Willis
, Mark Chapman
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Constructor Summary
Constructors Constructor Description GFF3FromUniprotBlastHits()
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description static void
main(java.lang.String[] args)
void
process(java.io.File xmlBlastHits, double ecutoff, java.util.LinkedHashMap<java.lang.String,GeneSequence> geneSequenceHashMap, java.io.OutputStream gff3Output)
void
process(java.util.LinkedHashMap<java.lang.String,java.util.ArrayList<java.lang.String>> hits, java.util.LinkedHashMap<java.lang.String,GeneSequence> geneSequenceHashMap, java.io.OutputStream gff3Output)
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Method Detail
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process
public void process(java.io.File xmlBlastHits, double ecutoff, java.util.LinkedHashMap<java.lang.String,GeneSequence> geneSequenceHashMap, java.io.OutputStream gff3Output) throws java.lang.Exception
- Throws:
java.lang.Exception
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process
public void process(java.util.LinkedHashMap<java.lang.String,java.util.ArrayList<java.lang.String>> hits, java.util.LinkedHashMap<java.lang.String,GeneSequence> geneSequenceHashMap, java.io.OutputStream gff3Output) throws java.lang.Exception
- Throws:
java.lang.Exception
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main
public static void main(java.lang.String[] args)
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