Uses of Interface
org.forester.surfacing.CombinableDomains
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Packages that use CombinableDomains Package Description org.forester.surfacing -
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Uses of CombinableDomains in org.forester.surfacing
Classes in org.forester.surfacing that implement CombinableDomains Modifier and Type Class Description class
AdjactantDirectedCombinableDomains
class
BasicCombinableDomains
class
DirectedCombinableDomains
Methods in org.forester.surfacing that return CombinableDomains Modifier and Type Method Description CombinableDomains
BasicGenomeWideCombinableDomains. get(java.lang.String key_id)
CombinableDomains
GenomeWideCombinableDomains. get(java.lang.String key_id)
Methods in org.forester.surfacing that return types with arguments of type CombinableDomains Modifier and Type Method Description java.util.SortedMap<java.lang.String,CombinableDomains>
BasicGenomeWideCombinableDomains. getAllCombinableDomainsIds()
java.util.SortedMap<java.lang.String,CombinableDomains>
GenomeWideCombinableDomains. getAllCombinableDomainsIds()
Methods in org.forester.surfacing with parameters of type CombinableDomains Modifier and Type Method Description PairwiseDomainSimilarity
CombinationsBasedPairwiseDomainSimilarityCalculator. calculateSimilarity(CombinableDomains domains_1, CombinableDomains domains_2)
PairwiseDomainSimilarity
DomainCountsBasedPairwiseSimilarityCalculator. calculateSimilarity(CombinableDomains domains_1, CombinableDomains domains_2)
PairwiseDomainSimilarity
PairwiseDomainSimilarityCalculator. calculateSimilarity(CombinableDomains domains_1, CombinableDomains domains_2)
PairwiseDomainSimilarity
ProteinCountsBasedPairwiseDomainSimilarityCalculator. calculateSimilarity(CombinableDomains domains_1, CombinableDomains domains_2)
Constructors in org.forester.surfacing with parameters of type CombinableDomains Constructor Description DomainSimilarity(CombinableDomains combinable_domains, double min, double max, double mean, double median, double sd, int n, int max_difference_in_counts, int max_difference, java.util.SortedMap<Species,org.forester.surfacing.SpeciesSpecificDcData> species_data, boolean sort_by_species_count_first, boolean treat_as_binary_comparison)
DomainSimilarity(CombinableDomains combinable_domains, int max_difference_in_counts, int max_difference, java.util.SortedMap<Species,org.forester.surfacing.SpeciesSpecificDcData> species_data, boolean sort_by_species_count_first, boolean treat_as_binary_comparison)
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