Class FCAlignHelper
- java.lang.Object
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- org.biojava.nbio.structure.align.fatcat.calc.FCAlignHelper
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public class FCAlignHelper extends java.lang.Object
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Constructor Summary
Constructors Constructor Description FCAlignHelper(double[][] sij0, int M0, int N0, double g0, double h0)
do an alignment given the provided matrix sij0
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description int
getAlignPos(int[][] alignList)
record the aligned pairs in alignList[][0], alignList[][1]; return the number of aligned pairs
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