Package org.biojava.nbio.core.sequence
Class IntronSequence
- java.lang.Object
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- org.biojava.nbio.core.sequence.template.AbstractSequence<NucleotideCompound>
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- org.biojava.nbio.core.sequence.DNASequence
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- org.biojava.nbio.core.sequence.IntronSequence
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- All Implemented Interfaces:
java.lang.Iterable<NucleotideCompound>
,Accessioned
,Sequence<NucleotideCompound>
public class IntronSequence extends DNASequence
- Author:
- Scooter Willis
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Nested Class Summary
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Nested classes/interfaces inherited from class org.biojava.nbio.core.sequence.DNASequence
DNASequence.DNAType
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Nested classes/interfaces inherited from class org.biojava.nbio.core.sequence.template.AbstractSequence
AbstractSequence.AnnotationType
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Constructor Summary
Constructors Constructor Description IntronSequence(GeneSequence parentGeneSequence, int begin, int end)
Place holder for Intron sequence features
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description int
getLength()
Returns the length of the Sequence-
Methods inherited from class org.biojava.nbio.core.sequence.DNASequence
getComplement, getDNAType, getGCCount, getReverse, getReverseComplement, getRNASequence, getRNASequence, getRNASequence, getRNASequence, main, setDNAType
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Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractSequence
addFeature, addFeature, addNote, countCompounds, equals, getAccession, getAnnotationType, getAsList, getBioBegin, getBioEnd, getComments, getCompoundAt, getCompoundSet, getDatabaseReferences, getDescription, getFeatureRetriever, getFeatures, getFeatures, getFeatures, getFeaturesByType, getFeaturesKeyWord, getIndexOf, getInverse, getLastIndexOf, getNotesList, getOriginalHeader, getParentSequence, getProxySequenceReader, getReferences, getSequenceAsString, getSequenceAsString, getSequenceScore, getSource, getSubSequence, getTaxonomy, getUserCollection, hashCode, iterator, removeFeature, removeNote, setAccession, setAnnotationType, setBioBegin, setBioEnd, setComments, setCompoundSet, setDatabaseReferences, setDescription, setFeatureRetriever, setFeaturesKeyWord, setNotesList, setOriginalHeader, setParentSequence, setProxySequenceReader, setReferences, setSequenceScore, setSource, setTaxonomy, setUserCollection, toString
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Constructor Detail
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IntronSequence
public IntronSequence(GeneSequence parentGeneSequence, int begin, int end)
Place holder for Intron sequence features- Parameters:
parentGeneSequence
-begin
-end
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Method Detail
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getLength
public int getLength()
Description copied from interface:Sequence
Returns the length of the Sequence- Specified by:
getLength
in interfaceSequence<NucleotideCompound>
- Overrides:
getLength
in classAbstractSequence<NucleotideCompound>
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