Package org.biojava.nbio.ws.hmmer
Class HmmerResult
- java.lang.Object
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- org.biojava.nbio.ws.hmmer.HmmerResult
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- All Implemented Interfaces:
java.io.Serializable
,java.lang.Comparable<HmmerResult>
public class HmmerResult extends java.lang.Object implements java.lang.Comparable<HmmerResult>, java.io.Serializable
The results of a Hmmer search for a single sequence- Since:
- 3.0.3
- Author:
- Andreas Prlic
- See Also:
- Serialized Form
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Constructor Summary
Constructors Constructor Description HmmerResult()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description int
compareTo(HmmerResult o)
java.lang.String
getAcc()
java.lang.Integer
getDcl()
java.lang.String
getDesc()
java.util.SortedSet<HmmerDomain>
getDomains()
java.lang.Float
getEvalue()
java.lang.String
getName()
java.lang.Integer
getNdom()
java.lang.Integer
getNreported()
int
getOverlapLength(HmmerResult other)
Get the overlap between two HmmerResult objectsjava.lang.Double
getPvalue()
java.lang.Float
getScore()
void
setAcc(java.lang.String acc)
void
setDcl(java.lang.Integer dcl)
void
setDesc(java.lang.String desc)
void
setDomains(java.util.SortedSet<HmmerDomain> domains)
void
setEvalue(java.lang.Float evalue)
void
setName(java.lang.String name)
void
setNdom(java.lang.Integer ndom)
void
setNreported(java.lang.Integer nreported)
void
setPvalue(java.lang.Double pvalue)
void
setScore(java.lang.Float score)
java.lang.String
toString()
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Method Detail
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getDomains
public java.util.SortedSet<HmmerDomain> getDomains()
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setDomains
public void setDomains(java.util.SortedSet<HmmerDomain> domains)
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getDesc
public java.lang.String getDesc()
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setDesc
public void setDesc(java.lang.String desc)
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getScore
public java.lang.Float getScore()
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setScore
public void setScore(java.lang.Float score)
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getEvalue
public java.lang.Float getEvalue()
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setEvalue
public void setEvalue(java.lang.Float evalue)
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getPvalue
public java.lang.Double getPvalue()
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setPvalue
public void setPvalue(java.lang.Double pvalue)
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getAcc
public java.lang.String getAcc()
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setAcc
public void setAcc(java.lang.String acc)
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getDcl
public java.lang.Integer getDcl()
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setDcl
public void setDcl(java.lang.Integer dcl)
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getName
public java.lang.String getName()
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setName
public void setName(java.lang.String name)
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getNdom
public java.lang.Integer getNdom()
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setNdom
public void setNdom(java.lang.Integer ndom)
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getNreported
public java.lang.Integer getNreported()
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setNreported
public void setNreported(java.lang.Integer nreported)
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toString
public java.lang.String toString()
- Overrides:
toString
in classjava.lang.Object
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compareTo
public int compareTo(HmmerResult o)
- Specified by:
compareTo
in interfacejava.lang.Comparable<HmmerResult>
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getOverlapLength
public int getOverlapLength(HmmerResult other)
Get the overlap between two HmmerResult objects- Parameters:
other
-- Returns:
- 0 if no overlap, otherwise the length of the overlap
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