Package org.snpeff.snpEffect
Enum ErrorWarningType
- java.lang.Object
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- java.lang.Enum<ErrorWarningType>
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- org.snpeff.snpEffect.ErrorWarningType
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- All Implemented Interfaces:
java.io.Serializable
,java.lang.Comparable<ErrorWarningType>
public enum ErrorWarningType extends java.lang.Enum<ErrorWarningType>
Errors and warnings
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Enum Constant Summary
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description boolean
isError()
boolean
isWarning()
static ErrorWarningType
valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name.static ErrorWarningType[]
values()
Returns an array containing the constants of this enum type, in the order they are declared.
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Enum Constant Detail
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INFO_REALIGN_3_PRIME
public static final ErrorWarningType INFO_REALIGN_3_PRIME
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WARNING_SEQUENCE_NOT_AVAILABLE
public static final ErrorWarningType WARNING_SEQUENCE_NOT_AVAILABLE
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WARNING_REF_DOES_NOT_MATCH_GENOME
public static final ErrorWarningType WARNING_REF_DOES_NOT_MATCH_GENOME
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WARNING_TRANSCRIPT_INCOMPLETE
public static final ErrorWarningType WARNING_TRANSCRIPT_INCOMPLETE
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WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS
public static final ErrorWarningType WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS
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WARNING_TRANSCRIPT_NO_START_CODON
public static final ErrorWarningType WARNING_TRANSCRIPT_NO_START_CODON
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WARNING_TRANSCRIPT_NO_STOP_CODON
public static final ErrorWarningType WARNING_TRANSCRIPT_NO_STOP_CODON
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ERROR_CHROMOSOME_NOT_FOUND
public static final ErrorWarningType ERROR_CHROMOSOME_NOT_FOUND
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ERROR_OUT_OF_CHROMOSOME_RANGE
public static final ErrorWarningType ERROR_OUT_OF_CHROMOSOME_RANGE
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ERROR_OUT_OF_EXON
public static final ErrorWarningType ERROR_OUT_OF_EXON
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ERROR_MISSING_CDS_SEQUENCE
public static final ErrorWarningType ERROR_MISSING_CDS_SEQUENCE
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WARNING_CDS_TOO_SHORT
public static final ErrorWarningType WARNING_CDS_TOO_SHORT
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WARNING_CHROMOSOME_NOT_FOUND
public static final ErrorWarningType WARNING_CHROMOSOME_NOT_FOUND
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WARNING_CHROMOSOME_CIRCULAR
public static final ErrorWarningType WARNING_CHROMOSOME_CIRCULAR
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WARNING_CHROMOSOME_LENGTH
public static final ErrorWarningType WARNING_CHROMOSOME_LENGTH
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WARNING_GENE_COORDINATES
public static final ErrorWarningType WARNING_GENE_COORDINATES
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WARNING_GENE_ID_DUPLICATE
public static final ErrorWarningType WARNING_GENE_ID_DUPLICATE
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WARNING_GENE_NOT_FOUND
public static final ErrorWarningType WARNING_GENE_NOT_FOUND
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WARNING_EXON_NOT_FOUND
public static final ErrorWarningType WARNING_EXON_NOT_FOUND
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WARNING_EXON_SEQUENCE_LENGTH
public static final ErrorWarningType WARNING_EXON_SEQUENCE_LENGTH
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WARNING_EXON_TOO_SHORT
public static final ErrorWarningType WARNING_EXON_TOO_SHORT
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WARNING_TRANSCRIPT_NOT_FOUND
public static final ErrorWarningType WARNING_TRANSCRIPT_NOT_FOUND
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WARNING_TRANSCRIPT_ID_DUPLICATE
public static final ErrorWarningType WARNING_TRANSCRIPT_ID_DUPLICATE
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WARNING_CANNOT_ADD_UTR
public static final ErrorWarningType WARNING_CANNOT_ADD_UTR
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WARNING_FRAMES_ZERO
public static final ErrorWarningType WARNING_FRAMES_ZERO
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WARNING_RARE_AA_POSSITION_NOT_FOUND
public static final ErrorWarningType WARNING_RARE_AA_POSSITION_NOT_FOUND
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WARNING_INVALID_INFO_KEY
public static final ErrorWarningType WARNING_INVALID_INFO_KEY
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WARNING_INVALID_INFO_VALUE
public static final ErrorWarningType WARNING_INVALID_INFO_VALUE
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ERROR_FILE_NOT_FOUND
public static final ErrorWarningType ERROR_FILE_NOT_FOUND
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WARNING_FILE_NOT_FOUND
public static final ErrorWarningType WARNING_FILE_NOT_FOUND
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WARNING_DUPLICATE_PRIMARY_KEY
public static final ErrorWarningType WARNING_DUPLICATE_PRIMARY_KEY
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Method Detail
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values
public static ErrorWarningType[] values()
Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:for (ErrorWarningType c : ErrorWarningType.values()) System.out.println(c);
- Returns:
- an array containing the constants of this enum type, in the order they are declared
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valueOf
public static ErrorWarningType valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)- Parameters:
name
- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
java.lang.IllegalArgumentException
- if this enum type has no constant with the specified namejava.lang.NullPointerException
- if the argument is null
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isError
public boolean isError()
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isWarning
public boolean isWarning()
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