Package org.snpeff.sam
Class SamHeaderRecordSq
- java.lang.Object
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- org.snpeff.sam.SamHeaderRecord
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- org.snpeff.sam.SamHeaderRecordSq
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public class SamHeaderRecordSq extends SamHeaderRecord
SQ header: Reference sequence dictionary. The order of @SQ lines defines the alignment sorting order.- Author:
- pcingola
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Constructor Summary
Constructors Constructor Description SamHeaderRecordSq(java.lang.String line)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description java.lang.String
getAssembly()
int
getLength()
java.lang.String
getMd5()
java.lang.String
getSequenceName()
java.lang.String
getSpecies()
java.lang.String
getUri()
protected void
init()
Initialize records before parsingprotected void
parseField(java.lang.String tag, java.lang.String value)
Parse a field for this recordjava.lang.String
toString()
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Methods inherited from class org.snpeff.sam.SamHeaderRecord
getRecordTypeCode, parse
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Method Detail
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getAssembly
public java.lang.String getAssembly()
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getLength
public int getLength()
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getMd5
public java.lang.String getMd5()
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getSequenceName
public java.lang.String getSequenceName()
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getSpecies
public java.lang.String getSpecies()
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getUri
public java.lang.String getUri()
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init
protected void init()
Description copied from class:SamHeaderRecord
Initialize records before parsing- Overrides:
init
in classSamHeaderRecord
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parseField
protected void parseField(java.lang.String tag, java.lang.String value)
Description copied from class:SamHeaderRecord
Parse a field for this record- Specified by:
parseField
in classSamHeaderRecord
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toString
public java.lang.String toString()
- Overrides:
toString
in classjava.lang.Object
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