CvTerm |
A controlled vocabulary term
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Location |
A location (i.e.
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LocationTargetIsoform |
A location respect to an isoform
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LocationTargetIsoformInteraction |
A location respect to two locations within an isoform
In this case "start" and "end" are not really an interval, but an interaction between
two locations (e.g.
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NextProtDb |
Parse NetxProt XML file and build a database
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NextProtHandler |
Handler used in XML parsing for NextProt database
It keeps track of the tags and saves state data to create Markers using NextProtMarkerFactory
http://www.nextprot.org/
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NextProtMarkerFactory |
Creates Markers from nextprot XML annotations
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NextProtSequenceConservation |
A simple analysis of sequence conservation for each entry type
Why? Many NextProt annotations are only a few amino acids long (or only 1 AA) and often
they only involve very specific sequences
If the sequence is highly conserved and a non-synonymous mutation occurs, then
this might be disruptive (i.e.
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NextProtXmlAnnotation |
Mimics the 'annotation' tag in a NextProt XML file
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NextProtXmlEntry |
Mimics the 'entry' in a NextProt XML file
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NextProtXmlIsoform |
Mimics the 'isoform-mapping' in a NextProt XML file
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NextProtXmlNode |
Mimics a node in NextProt XML file
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