Package org.snpeff.geneSets.algorithm
-
Class Summary Class Description EnrichmentAlgorithm A generic enrichment algorithm for selecting gene-sets from a collection of gene-setsEnrichmentAlgorithmGreedy A generic greedy enrichment algorithm for selecting gene-setsEnrichmentAlgorithmGreedyVariableSize A greedy enrichment algorithm for selecting gene-sets using a variable geneSet-size strategy: i) Select only from geneSets in low-sizes e.g.FisherPValueAlgorithm FisherPValueGreedyAlgorithm LeadingEdgeFractionAlgorithm Leading edge fraction algorithm References: "Common Inherited Variation in Mitochondrial Genes Is Not Enriched for Associations with Type 2 Diabetes or Related Glycemic Traits" http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001058 See page 12, "Step 4"NoneAlgorithm An algorithm that does nothingRankSumPValueAlgorithm RankSumPValueGreedyAlgorithm -
Enum Summary Enum Description EnrichmentAlgorithm.EnrichmentAlgorithmType