Class TestCasesIntegrationSnpEff
- java.lang.Object
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- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
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- org.snpeff.snpEffect.testCases.integration.IntegrationTest
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- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationSnpEff
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public class TestCasesIntegrationSnpEff extends IntegrationTest
Invoke all integration test cases- Author:
- pcingola
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Field Summary
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Fields inherited from class org.snpeff.snpEffect.testCases.integration.IntegrationTest
BUFFER_SIZE, MAX_LINES_DIFF
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Fields inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
BASE_DIR, debug, ignoreErrors, prefixes, shiftHgvs, SHOW_EVERY, testsDir, testType, verbose
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Constructor Summary
Constructors Constructor Description TestCasesIntegrationSnpEff()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
test_01()
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Methods inherited from class org.snpeff.snpEffect.testCases.integration.IntegrationTest
command, command, showCommand, showDiff, showDiffLine
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Methods inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
applyTranscript, before, build, buildAndCompare, buildEmbl, buildGeneBank, buildGeneBank, buildGetBuildCmd, buildGff3AndCompare, buildGtfAndCompare, checkHgvs, checkNoChange, checkTranscriptError, compareHgvs, compareHgvs, compareVep, compareVepSO, init, loadSnpEffectPredictor, path, pathClassName, pathMigrate, showTranscripts, showTranscripts, snpEffect, snpEffect, snpEffectCancer
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