Class VcfNmd


  • public class VcfNmd
    extends VcfLof
    An 'NMD' entry in a vcf line
    Author:
    pablocingolani
    • Constructor Detail

      • VcfNmd

        public VcfNmd​(Gene gene,
                      double percentAffected)
      • VcfNmd

        public VcfNmd​(java.lang.String nmdStr)
      • VcfNmd

        public VcfNmd​(java.lang.String geneName,
                      java.lang.String geneId,
                      int numTranscripts,
                      double percentAffected)
      • VcfNmd

        public VcfNmd​(VcfEntry vcfEntry,
                      java.lang.String nmdStr)
    • Method Detail

      • fieldNum

        public static int fieldNum​(java.lang.String name)
        Convert from field name to field number