Class Hgvs

  • Direct Known Subclasses:
    HgvsDna, HgvsProtein

    public class Hgvs
    extends java.lang.Object
    HGSV notation References: http://www.hgvs.org/
    Author:
    pcingola
    • Field Detail

      • variant

        protected Variant variant
      • marker

        protected Marker marker
      • genome

        protected Genome genome
      • duplication

        protected boolean duplication
      • strandPlus

        protected boolean strandPlus
      • strandMinus

        protected boolean strandMinus
      • hgvsTrId

        protected boolean hgvsTrId
    • Method Detail

      • parseTranscript

        public static java.lang.String parseTranscript​(java.lang.String hgvs)
      • removeTranscript

        public static java.lang.String removeTranscript​(java.lang.String hgvs)
      • initStrand

        protected void initStrand()