Class SamFileIterator

  • All Implemented Interfaces:
    java.lang.Iterable<SamEntry>, java.util.Iterator<SamEntry>

    public class SamFileIterator
    extends FileIterator<SamEntry>
    Reads a SAM file Note: This is a very 'rustic' reader (we should use Picard's API instead)
    Author:
    pcingola
    • Field Detail

      • debug

        public static boolean debug
    • Constructor Detail

      • SamFileIterator

        public SamFileIterator​(java.lang.String samFileName)