Class TestCasesStructuralDup


  • public class TestCasesStructuralDup
    extends TestCasesBase
    Test case for structural variants: Duplications
    • Constructor Detail

      • TestCasesStructuralDup

        public TestCasesStructuralDup()
    • Method Detail

      • checkEffects

        protected void checkEffects​(Variant variant,
                                    EffectType[] expEffs,
                                    java.lang.String[] expHgvsp,
                                    java.lang.String[] expHgvsc,
                                    VariantEffect.EffectImpact expectedImpact,
                                    java.lang.String[] expAnns)
      • test01_dupGene

        @Test
        public void test01_dupGene()
        Duplication Whole gene
      • test01_dupTr

        @Test
        public void test01_dupTr()
        Duplication whole transcript
      • test02

        @Test
        public void test02()
        Duplication One coding exon
      • test03

        @Test
        public void test03()
        Duplication two coding exons (within the same gene)
      • test04

        @Test
        public void test04()
        Duplication Part of one coding exon
      • test05

        @Test
        public void test05()
        Duplication Part of two coding exons (within the same gene)
      • test06

        @Test
        public void test06()
        Duplication Two genes
      • test07

        @Test
        public void test07()
        Duplication After gene's coding region (LOW impact)
      • test08

        @Test
        public void test08()
        Duplication Part of two genes cutting on introns
      • test09

        @Test
        public void test09()
        Duplication Part of two genes cutting exons
      • test10

        @Test
        public void test10()
        Duplication Intron