Uses of Class
org.snpeff.interval.BioType
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Packages that use BioType Package Description org.snpeff.interval org.snpeff.snpEffect org.snpeff.vcf -
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Uses of BioType in org.snpeff.interval
Methods in org.snpeff.interval that return BioType Modifier and Type Method Description static BioType
BioType. coding(boolean isCoding)
Basic bioTypes for coding / non-coding genesBioType
GffMarker. getBiotype()
BioType
Gene. getBioType()
BioType
Transcript. getBioType()
protected BioType
GffMarker. getBiotypeGeneric()
BioType
GffMarker. getGeneBiotype()
BioType
GffMarker. getTranscriptBiotype()
static BioType
BioType. parse(java.lang.String str)
Parse a BioTypestatic BioType
BioType. valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name.static BioType[]
BioType. values()
Returns an array containing the constants of this enum type, in the order they are declared.Methods in org.snpeff.interval with parameters of type BioType Modifier and Type Method Description void
Gene. setBioType(BioType bioType)
void
Transcript. setBioType(BioType bioType)
Constructors in org.snpeff.interval with parameters of type BioType Constructor Description Gene(Marker parent, int start, int end, boolean strandMinus, java.lang.String id, java.lang.String geneName, BioType bioType)
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Uses of BioType in org.snpeff.snpEffect
Methods in org.snpeff.snpEffect that return BioType Modifier and Type Method Description BioType
VariantEffect. getBiotype()
Get biotype -
Uses of BioType in org.snpeff.vcf
Methods in org.snpeff.vcf that return BioType Modifier and Type Method Description BioType
VcfEffect. getBioType()
Methods in org.snpeff.vcf with parameters of type BioType Modifier and Type Method Description void
VcfEffect. setBioType(BioType bioType)
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