Package org.snpeff.spliceSites
Class TranscriptSet
- java.lang.Object
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- org.snpeff.spliceSites.TranscriptSet
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- All Implemented Interfaces:
java.lang.Iterable<Transcript>
public class TranscriptSet extends java.lang.Object implements java.lang.Iterable<Transcript>
A set of transcripts- Author:
- pablocingolani
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Field Summary
Fields Modifier and Type Field Description static int
MAX_TRANSCRIPTS_PER_GENE
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Constructor Summary
Constructors Constructor Description TranscriptSet(Genome genome)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
filter()
Filter out "bad transcripts"java.util.List<Transcript>
getByChromo(java.lang.String chrName)
java.util.Iterator<Transcript>
iterator()
void
setDebug(boolean debug)
void
setVerbose(boolean verbose)
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Field Detail
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MAX_TRANSCRIPTS_PER_GENE
public static final int MAX_TRANSCRIPTS_PER_GENE
- See Also:
- Constant Field Values
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Constructor Detail
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TranscriptSet
public TranscriptSet(Genome genome)
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Method Detail
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filter
public void filter()
Filter out "bad transcripts"
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getByChromo
public java.util.List<Transcript> getByChromo(java.lang.String chrName)
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iterator
public java.util.Iterator<Transcript> iterator()
- Specified by:
iterator
in interfacejava.lang.Iterable<Transcript>
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setDebug
public void setDebug(boolean debug)
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setVerbose
public void setVerbose(boolean verbose)
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