Class LeadingEdgeFractionAlgorithm


  • public class LeadingEdgeFractionAlgorithm
    extends FisherPValueGreedyAlgorithm
    Leading edge fraction algorithm References: "Common Inherited Variation in Mitochondrial Genes Is Not Enriched for Associations with Type 2 Diabetes or Related Glycemic Traits" http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001058 See page 12, "Step 4"
    Author:
    pablocingolani
    • Field Detail

      • SCORE_CUTOFF_QUANTILE_DEFAULT

        public static final double SCORE_CUTOFF_QUANTILE_DEFAULT
        See Also:
        Constant Field Values
      • ONE

        public static final org.apfloat.Apfloat ONE
    • Constructor Detail

      • LeadingEdgeFractionAlgorithm

        public LeadingEdgeFractionAlgorithm​(GeneSets geneSets,
                                            int numberToSelect,
                                            boolean orderDescending)
    • Method Detail

      • setOrderDescending

        public void setOrderDescending​(boolean orderDescending)
      • setpValueCutOffQuantile

        public void setpValueCutOffQuantile​(double pValueCutOffQuantile)