Class TestCasesIntegrationHgvsFrameShift
- java.lang.Object
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- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
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- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationHgvsFrameShift
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public class TestCasesIntegrationHgvsFrameShift extends TestCasesIntegrationBase
Test case
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Field Summary
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Fields inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
BASE_DIR, debug, ignoreErrors, prefixes, shiftHgvs, SHOW_EVERY, testsDir, testType, verbose
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Constructor Summary
Constructors Constructor Description TestCasesIntegrationHgvsFrameShift()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
test_01_hgvs_frameshift()
Test HGVS.P in a synonymous frame shiftvoid
test_02_hgvs_frameshift()
Test HGVS.P in a synonymous frame shiftvoid
test_03_hgvs_frameshift()
Test HGVS.P in a synonymous frame shiftvoid
test_04_hgvs_frameshift()
Test HGVS.P in a synonymous frame shiftvoid
test_05_hgvs_frameshift()
Test HGVS.P in a synonymous frame shiftvoid
test_06_hgvs_frameshift()
Test HGVS frameshift at CDS end-
Methods inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
applyTranscript, before, build, buildAndCompare, buildEmbl, buildGeneBank, buildGeneBank, buildGetBuildCmd, buildGff3AndCompare, buildGtfAndCompare, checkHgvs, checkNoChange, checkTranscriptError, compareHgvs, compareHgvs, compareVep, compareVepSO, init, loadSnpEffectPredictor, path, pathClassName, pathMigrate, showTranscripts, showTranscripts, snpEffect, snpEffect, snpEffectCancer
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Method Detail
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test_01_hgvs_frameshift
@Test public void test_01_hgvs_frameshift()
Test HGVS.P in a synonymous frame shift
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test_02_hgvs_frameshift
@Test public void test_02_hgvs_frameshift()
Test HGVS.P in a synonymous frame shift
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test_03_hgvs_frameshift
@Test public void test_03_hgvs_frameshift()
Test HGVS.P in a synonymous frame shift
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test_04_hgvs_frameshift
@Test public void test_04_hgvs_frameshift()
Test HGVS.P in a synonymous frame shift
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test_05_hgvs_frameshift
@Test public void test_05_hgvs_frameshift()
Test HGVS.P in a synonymous frame shift
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test_06_hgvs_frameshift
@Test public void test_06_hgvs_frameshift()
Test HGVS frameshift at CDS end
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