Uses of Class
org.snpeff.binseq.coder.Coder
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Packages that use Coder Package Description org.snpeff.binseq org.snpeff.binseq.coder org.snpeff.overlap -
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Uses of Coder in org.snpeff.binseq
Fields in org.snpeff.binseq declared as Coder Modifier and Type Field Description static Coder
DnaSequencePe. coder
Methods in org.snpeff.binseq that return Coder Modifier and Type Method Description abstract Coder
BinarySequence. getCoder()
Get sequence encoder & decoderCoder
DnaAndQualitySequence. getCoder()
Coder
DnaSequence. getCoder()
Coder
DnaSequencePe. getCoder()
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Uses of Coder in org.snpeff.binseq.coder
Subclasses of Coder in org.snpeff.binseq.coder Modifier and Type Class Description class
DnaCoder
Class used to encode & decode sequences into binary and vice-versa Note:This is a singleton class.class
DnaQualityCoder
Class used to encode & decode sequences into binary and vice-versa - Every base is encoded in 8 bits: - Six bits for the base quality [0 , .. -
Uses of Coder in org.snpeff.overlap
Constructors in org.snpeff.overlap with parameters of type Coder Constructor Description BasesChangeCounter(Coder coder)
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