Class Downstream

  • All Implemented Interfaces:
    java.io.Serializable, java.lang.Cloneable, java.lang.Comparable<Interval>, TxtSerializable

    public class Downstream
    extends Marker
    Interval for a gene, as well as some other information: exons, utrs, cds, etc.
    Author:
    pcingola
    See Also:
    Serialized Form
    • Constructor Detail

      • Downstream

        public Downstream()
      • Downstream

        public Downstream​(Transcript parent,
                          int start,
                          int end,
                          boolean strandMinus,
                          java.lang.String id)
    • Method Detail

      • distanceToTr

        public int distanceToTr​(Variant variant)
        Distance to transcript
      • isShowWarningIfParentDoesNotInclude

        protected boolean isShowWarningIfParentDoesNotInclude()
        Upstream sites are no included in transcript (by definition).
        Overrides:
        isShowWarningIfParentDoesNotInclude in class Marker