Class SnpEffCmdSeq

  • All Implemented Interfaces:
    CommandLine

    public class SnpEffCmdSeq
    extends SnpEff
    Command line program: Show a transcript or a gene
    Author:
    pcingola
    • Constructor Detail

      • SnpEffCmdSeq

        public SnpEffCmdSeq()
    • Method Detail

      • parseArgs

        public void parseArgs​(java.lang.String[] args)
        Parse command line arguments
        Specified by:
        parseArgs in interface CommandLine
        Overrides:
        parseArgs in class SnpEff
      • run

        public boolean run()
        Run according to command line options
        Specified by:
        run in interface CommandLine
        Overrides:
        run in class SnpEff
      • usage

        public void usage​(java.lang.String message)
        Show 'usage' message and exit with an error code '-1'
        Specified by:
        usage in interface CommandLine
        Overrides:
        usage in class SnpEff