Class TestCasesHgvsDnaDup


  • public class TestCasesHgvsDnaDup
    extends TestCasesBase
    Test case
    • Constructor Detail

      • TestCasesHgvsDnaDup

        public TestCasesHgvsDnaDup()
    • Method Detail

      • test_01

        @Test
        public void test_01()
      • test_02

        @Test
        public void test_02()
      • test_03

        @Test
        public void test_03()
        Test case from http://www.hgvs.org/mutnomen/recs-DNA.html g.5dupT (or g.5dup, not g.5_6insT) denotes a duplication ("insertion") of the T nucleotide at position 5 in the genomic reference sequence changing ACTCTGTGCC to ACTCTTGTGCC
      • test_04

        @Test
        public void test_04()
        Test case from http://www.hgvs.org/mutnomen/recs-DNA.html g.7dupT (or g.7dup, not g.5dupT, not g.7_8insT) denotes a duplication ("insertion") of the T nucleotide at position 7 in the genomic reference sequence changing AGACTTTGTGCC to AGACTTTTGTGCC
      • test_05

        @Test
        public void test_05()
        Test case from http://www.hgvs.org/mutnomen/recs-DNA.html g.7_8dup (or g.7_8dupTG, not g.5_6dup, not g.8_9insTG) denotes a TG duplication in the TG-tandem repeat sequence changing ACTTTGTGCC to ACTTTGTGTGCC
      • test_06

        @Test
        public void test_06()
      • test_07

        @Test
        public void test_07()
        Duplication with variant shifted towards 3-prime
      • test_08

        @Test
        public void test_08()
        Duplication with variant shifted towards 3-prime
      • test_09

        @Test
        public void test_09()
        Dup in intron
      • test_10

        @Test
        public void test_10()
        Dup in exon-intron boundary
      • test_11

        @Test
        public void test_11()
        Dup in intron-exon boundary