Package org.snpeff.stats
Class PosStats
- java.lang.Object
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- org.snpeff.stats.ChrPosStats
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- org.snpeff.stats.PosStats
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public class PosStats extends ChrPosStats
How many changes per position do we have in a chromosome. Summary by dividing the chromosome into MAX_BINS bins- Author:
- pcingola
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Field Summary
Fields Modifier and Type Field Description static int
DEFAULT_BINS
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Fields inherited from class org.snpeff.stats.ChrPosStats
debug
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
rand(int maxLen, int countMax)
Create random counts (used for debugging)void
sample(Marker marker, Marker markerReference)
Use 'num' as a sampleint
size()
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Methods inherited from class org.snpeff.stats.ChrPosStats
getCount, getTotal, posArray, sample, toString, toStringHistoPlot
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Field Detail
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DEFAULT_BINS
public static final int DEFAULT_BINS
- See Also:
- Constant Field Values
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Method Detail
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rand
public void rand(int maxLen, int countMax)
Create random counts (used for debugging)- Parameters:
maxLen
-countMax
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size
public int size()
- Overrides:
size
in classChrPosStats
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