Package org.snpeff.interval.codonChange
Class CodonChangeInterval
- java.lang.Object
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- org.snpeff.interval.codonChange.CodonChange
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- org.snpeff.interval.codonChange.CodonChangeInterval
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public class CodonChangeInterval extends CodonChange
Calculate codon changes produced by a Interval Note: An interval does not produce any effect.- Author:
- pcingola
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Field Summary
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Fields inherited from class org.snpeff.interval.codonChange.CodonChange
CODON_SIZE, showCodonChange
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Constructor Summary
Constructors Constructor Description CodonChangeInterval(Variant variant, Transcript transcript, VariantEffects varEffects)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description protected boolean
codonChange(Exon exon)
Interval is not a variant, nothing to do-
Methods inherited from class org.snpeff.interval.codonChange.CodonChange
additionalEffect, cdsBaseNumber, codonChange, codonsAlt, codonsRef, codonsRef, effect, effectNoCodon, effectNoCodon, factory, intersectsExons, netCdsChange, toString
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Constructor Detail
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CodonChangeInterval
public CodonChangeInterval(Variant variant, Transcript transcript, VariantEffects varEffects)
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Method Detail
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codonChange
protected boolean codonChange(Exon exon)
Interval is not a variant, nothing to do- Overrides:
codonChange
in classCodonChange
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