Class TestCasesIntegrationSnpEnsembl
- java.lang.Object
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- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
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- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationSnpEnsembl
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public class TestCasesIntegrationSnpEnsembl extends TestCasesIntegrationBase
Test random SNP changes- Author:
- pcingola
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Field Summary
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Fields inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
BASE_DIR, debug, ignoreErrors, prefixes, shiftHgvs, SHOW_EVERY, testsDir, testType, verbose
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Constructor Summary
Constructors Constructor Description TestCasesIntegrationSnpEnsembl()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
test_01_ENST00000369219()
void
test_01_ENST00000369368()
void
test_01_ENST00000415551()
void
test_01_ENST00000434489()
void
test_02()
void
test_03()
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Methods inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
applyTranscript, before, build, buildAndCompare, buildEmbl, buildGeneBank, buildGeneBank, buildGetBuildCmd, buildGff3AndCompare, buildGtfAndCompare, checkHgvs, checkNoChange, checkTranscriptError, compareHgvs, compareHgvs, compareVep, compareVepSO, init, loadSnpEffectPredictor, path, pathClassName, pathMigrate, showTranscripts, showTranscripts, snpEffect, snpEffect, snpEffectCancer
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Method Detail
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test_01_ENST00000369219
@Test public void test_01_ENST00000369219()
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test_01_ENST00000369368
@Test public void test_01_ENST00000369368()
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test_01_ENST00000415551
@Test public void test_01_ENST00000415551()
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test_01_ENST00000434489
@Test public void test_01_ENST00000434489()
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test_02
@Test public void test_02()
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test_03
@Test public void test_03()
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