Class TestCasesIntegrationHgvsHard
- java.lang.Object
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- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
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- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationHgvsHard
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public class TestCasesIntegrationHgvsHard extends TestCasesIntegrationBase
Test case HGSV: Hard cases
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Field Summary
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Fields inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
BASE_DIR, debug, ignoreErrors, prefixes, shiftHgvs, SHOW_EVERY, testsDir, testType, verbose
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Constructor Summary
Constructors Constructor Description TestCasesIntegrationHgvsHard()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
test_hgvs_dup()
Test some 'dup' form chr17void
test_hgvs_md_chr17()
void
test_hgvs_walk_and_roll_1()
void
test_hgvs_walk_and_roll_2()
void
test_hgvs_walk_and_roll_3()
void
test_HgvsP_deleteion_length()
HGVS (protein) was reporting a wrong deletion lengthvoid
test_HgvsP_deleteion_length_2()
Some difficult HGVS test case-
Methods inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
applyTranscript, before, build, buildAndCompare, buildEmbl, buildGeneBank, buildGeneBank, buildGetBuildCmd, buildGff3AndCompare, buildGtfAndCompare, checkHgvs, checkNoChange, checkTranscriptError, compareHgvs, compareHgvs, compareVep, compareVepSO, init, loadSnpEffectPredictor, path, pathClassName, pathMigrate, showTranscripts, showTranscripts, snpEffect, snpEffect, snpEffectCancer
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Method Detail
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test_hgvs_dup
@Test public void test_hgvs_dup()
Test some 'dup' form chr17
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test_hgvs_md_chr17
@Test public void test_hgvs_md_chr17()
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test_hgvs_walk_and_roll_1
@Test public void test_hgvs_walk_and_roll_1()
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test_hgvs_walk_and_roll_2
@Test public void test_hgvs_walk_and_roll_2()
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test_hgvs_walk_and_roll_3
@Test public void test_hgvs_walk_and_roll_3()
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test_HgvsP_deleteion_length
@Test public void test_HgvsP_deleteion_length()
HGVS (protein) was reporting a wrong deletion length
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test_HgvsP_deleteion_length_2
@Test public void test_HgvsP_deleteion_length_2()
Some difficult HGVS test case
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