Package org.snpeff.stats
Class TranslocationReport
- java.lang.Object
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- org.snpeff.stats.TranslocationReport
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public class TranslocationReport extends java.lang.Object
Pojo for translocation reports- Author:
- pcingola
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Constructor Summary
Constructors Constructor Description TranslocationReport(VariantBnd var, VcfEffect veff, Transcript tr1, Transcript tr2)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description java.lang.String
getChr1()
java.lang.String
getChr2()
java.lang.String
getGeneName1()
java.lang.String
getGeneName2()
java.lang.String
getHgvsC()
java.lang.String
getHgvsP()
java.lang.String
getImpact()
java.lang.String
getIndex()
int
getPos1OneBased()
Get position (as one-based coordinates)int
getPos2OneBased()
Get position (as one-based coordinates)java.lang.String
getSvgPlot()
java.lang.String
getTrId1()
java.lang.String
getTrId2()
java.lang.String
getVariantEffect()
java.lang.String
getVcfEffect()
void
setSvgPlot(java.lang.String svgPlot)
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Constructor Detail
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TranslocationReport
public TranslocationReport(VariantBnd var, VcfEffect veff, Transcript tr1, Transcript tr2)
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Method Detail
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getChr1
public java.lang.String getChr1()
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getChr2
public java.lang.String getChr2()
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getGeneName1
public java.lang.String getGeneName1()
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getGeneName2
public java.lang.String getGeneName2()
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getHgvsC
public java.lang.String getHgvsC()
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getHgvsP
public java.lang.String getHgvsP()
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getImpact
public java.lang.String getImpact()
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getIndex
public java.lang.String getIndex()
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getPos1OneBased
public int getPos1OneBased()
Get position (as one-based coordinates)
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getPos2OneBased
public int getPos2OneBased()
Get position (as one-based coordinates)
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getSvgPlot
public java.lang.String getSvgPlot()
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getTrId1
public java.lang.String getTrId1()
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getTrId2
public java.lang.String getTrId2()
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getVariantEffect
public java.lang.String getVariantEffect()
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getVcfEffect
public java.lang.String getVcfEffect()
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setSvgPlot
public void setSvgPlot(java.lang.String svgPlot)
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