Class SnpEffPredictorFactoryRand


  • public class SnpEffPredictorFactoryRand
    extends SnpEffPredictorFactoryGff
    This class creates a random set of chromosomes, genes, transcripts and exons
    Author:
    pcingola
    • Constructor Detail

      • SnpEffPredictorFactoryRand

        public SnpEffPredictorFactoryRand​(Config config,
                                          java.util.Random random,
                                          int maxGeneLen,
                                          int maxTranscripts,
                                          int maxExons)
    • Method Detail

      • getChromoSequence

        public java.lang.String getChromoSequence()
      • setAddUtrs

        public void setAddUtrs​(boolean addUtrs)
      • setChromo

        public void setChromo​(Chromosome chromo)
      • setForceNegativeStrand

        public void setForceNegativeStrand​(boolean forceNegativeStrand)
      • setForcePositiveStrand

        public void setForcePositiveStrand​(boolean forcePositive)
      • setMinExons

        public void setMinExons​(int minExons)
      • setNumGenes

        public void setNumGenes​(int numGenes)