Uses of Class
org.snpeff.stats.CountByType
-
Packages that use CountByType Package Description org.snpeff.coverage org.snpeff.interval org.snpeff.stats -
-
Uses of CountByType in org.snpeff.coverage
Methods in org.snpeff.coverage that return CountByType Modifier and Type Method Description CountByType
CountReads. getCountTypes()
Methods in org.snpeff.coverage with parameters of type CountByType Modifier and Type Method Description java.lang.String
CountReadsOnMarkers. probabilityTable(CountByType prob)
Show probabilities -
Uses of CountByType in org.snpeff.interval
Methods in org.snpeff.interval that return CountByType Modifier and Type Method Description CountByType
ExonSpliceCharacterizer. characterize()
Characterize all exons -
Uses of CountByType in org.snpeff.stats
Methods in org.snpeff.stats that return CountByType Modifier and Type Method Description CountByType
ReadsOnMarkersModel. getCountBases()
CountByType
VariantStats. getCountByChangeType()
Number of variants by typeCountByType
VariantEffectStats. getCountByEffect()
CountByType
VariantEffectStats. getCountByFunctionalClass()
CountByType
VariantEffectStats. getCountByGeneRegion()
CountByType
VariantEffectStats. getCountByImpact()
CountByType
GeneCountByTypeTable. getCounter(java.lang.String type)
Get counter for this typeCountByType
GeneCountByTypeTable. getCounterSize(java.lang.String type)
Get size counter for this typeCountByType
ReadsOnMarkersModel. getCountMarkers()
CountByType
ReadsOnMarkersModel. getProb()
CountByType
ReadsOnMarkersModel. getRawCountBases()
CountByType
ReadsOnMarkersModel. getRawCountMarkers()
-