Package org.snpeff.interval.tree
Class IntervalNodeOri
- java.lang.Object
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- org.snpeff.interval.tree.IntervalNodeOri
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- All Implemented Interfaces:
java.io.Serializable
,java.lang.Iterable<Marker>
public class IntervalNodeOri extends java.lang.Object implements java.io.Serializable, java.lang.Iterable<Marker>
The Node class contains the interval tree information for one single node- See Also:
- Serialized Form
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Constructor Summary
Constructors Constructor Description IntervalNodeOri()
IntervalNodeOri(Markers markers)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description java.lang.Integer
getCenter()
IntervalNodeOri
getLeft()
IntervalNodeOri
getRight()
java.util.Iterator<Marker>
iterator()
Markers
query(Interval target)
Perform an interval intersection query on the nodeMarkers
stab(java.lang.Integer point)
Perform a stabbing query on the nodejava.lang.String
toString()
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Constructor Detail
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IntervalNodeOri
public IntervalNodeOri()
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IntervalNodeOri
public IntervalNodeOri(Markers markers)
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Method Detail
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getCenter
public java.lang.Integer getCenter()
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getLeft
public IntervalNodeOri getLeft()
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getRight
public IntervalNodeOri getRight()
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iterator
public java.util.Iterator<Marker> iterator()
- Specified by:
iterator
in interfacejava.lang.Iterable<Marker>
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query
public Markers query(Interval target)
Perform an interval intersection query on the node- Parameters:
target
- : the interval to intersect- Returns:
- all intervals containing 'target'
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stab
public Markers stab(java.lang.Integer point)
Perform a stabbing query on the node- Parameters:
point
- the time to query at- Returns:
- all intervals containing time
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toString
public java.lang.String toString()
- Overrides:
toString
in classjava.lang.Object
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