Class TestCasesFileIndexChrPos


  • public class TestCasesFileIndexChrPos
    extends java.lang.Object
    Test cases for file index (chr:pos index on files)
    Author:
    pcingola
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void test_00_long_file()
      Test getting random lines from a file
      void test_00_short_file()
      Test getting random lines from a file
      void test_01()
      Test : Find beginning of a chromosome
      void test_02()
      Test : Find a line
      void test_03()
      Test : Find a chr:pos
      void test_04()
      Test : Find a chr:pos
      void test_05()
      Test : Find a chr:pos that does not exists
      void test_06()
      Test : Find a chr:pos that does not exists
      void test_07()
      Test : Find a chr:pos that does not exists
      void test_10()  
      void test_11()
      Test : Find a chr:pos that does not exists
      void test_20()
      Test : Find a chr:pos that does not exists
      void test_21()
      Test : Find a chr:pos that does not exists
      void test_22()
      Test : Find a chr:pos that does not exists
      void test_23()
      Test : Dump small portions of a file
      void test_24()
      Test : Dump large portions of a file
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • TestCasesFileIndexChrPos

        public TestCasesFileIndexChrPos()
    • Method Detail

      • test_00_long_file

        public void test_00_long_file()
                               throws java.io.IOException
        Test getting random lines from a file
        Throws:
        java.io.IOException
      • test_00_short_file

        public void test_00_short_file()
                                throws java.io.IOException
        Test getting random lines from a file
        Throws:
        java.io.IOException
      • test_01

        public void test_01()
                     throws java.io.IOException
        Test : Find beginning of a chromosome
        Throws:
        java.io.IOException
      • test_02

        public void test_02()
                     throws java.io.IOException
        Test : Find a line
        Throws:
        java.io.IOException
      • test_03

        public void test_03()
                     throws java.io.IOException
        Test : Find a chr:pos
        Throws:
        java.io.IOException
      • test_04

        public void test_04()
                     throws java.io.IOException
        Test : Find a chr:pos
        Throws:
        java.io.IOException
      • test_05

        public void test_05()
                     throws java.io.IOException
        Test : Find a chr:pos that does not exists
        Throws:
        java.io.IOException
      • test_06

        public void test_06()
                     throws java.io.IOException
        Test : Find a chr:pos that does not exists
        Throws:
        java.io.IOException
      • test_07

        public void test_07()
                     throws java.io.IOException
        Test : Find a chr:pos that does not exists
        Throws:
        java.io.IOException
      • test_10

        public void test_10()
                     throws java.io.IOException
        Throws:
        java.io.IOException
      • test_11

        public void test_11()
                     throws java.io.IOException
        Test : Find a chr:pos that does not exists
        Throws:
        java.io.IOException
      • test_20

        public void test_20()
                     throws java.io.IOException
        Test : Find a chr:pos that does not exists
        Throws:
        java.io.IOException
      • test_21

        public void test_21()
                     throws java.io.IOException
        Test : Find a chr:pos that does not exists
        Throws:
        java.io.IOException
      • test_22

        public void test_22()
                     throws java.io.IOException
        Test : Find a chr:pos that does not exists
        Throws:
        java.io.IOException
      • test_23

        public void test_23()
                     throws java.io.IOException
        Test : Dump small portions of a file
        Throws:
        java.io.IOException
      • test_24

        public void test_24()
                     throws java.io.IOException
        Test : Dump large portions of a file
        Throws:
        java.io.IOException