Uses of Class
org.snpeff.interval.Variant.VariantType
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Packages that use Variant.VariantType Package Description org.snpeff.align org.snpeff.interval org.snpeff.snpEffect.testCases.unity org.snpeff.stats -
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Uses of Variant.VariantType in org.snpeff.align
Methods in org.snpeff.align that return Variant.VariantType Modifier and Type Method Description Variant.VariantType
VcfRefAltAlign. getVariantType()
Methods in org.snpeff.align with parameters of type Variant.VariantType Modifier and Type Method Description void
VcfRefAltAlign. setVariantType(Variant.VariantType variantType)
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Uses of Variant.VariantType in org.snpeff.interval
Fields in org.snpeff.interval declared as Variant.VariantType Modifier and Type Field Description protected Variant.VariantType
Variant. variantType
Methods in org.snpeff.interval that return Variant.VariantType Modifier and Type Method Description Variant.VariantType
Variant. getVariantType()
static Variant.VariantType
Variant.VariantType. valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name.static Variant.VariantType[]
Variant.VariantType. values()
Returns an array containing the constants of this enum type, in the order they are declared.Methods in org.snpeff.interval with parameters of type Variant.VariantType Modifier and Type Method Description void
Variant. setVariantType(Variant.VariantType variantType)
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Uses of Variant.VariantType in org.snpeff.snpEffect.testCases.unity
Methods in org.snpeff.snpEffect.testCases.unity with parameters of type Variant.VariantType Modifier and Type Method Description void
TestCasesBase. checkApply(Variant variant, Variant.VariantType varType, java.lang.String expectedCds, java.lang.String expectedProtein, int exonRank, int expectedExon1Start, int expectedExon1End)
Apply a variant to a transcript and check resulting CDS sequence, protein sequence and exon coordinates -
Uses of Variant.VariantType in org.snpeff.stats
Methods in org.snpeff.stats that return Variant.VariantType Modifier and Type Method Description Variant.VariantType[]
VariantStats. getChangeType()
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