Class TestCasesIntegrationHgvsIns
- java.lang.Object
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- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
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- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationHgvsIns
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public class TestCasesIntegrationHgvsIns extends TestCasesIntegrationBase
Test cases for HGVS notation on insertions
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Field Summary
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Fields inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
debug, ignoreErrors, shiftHgvs, SHOW_EVERY, testsDir, verbose
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Constructor Summary
Constructors Constructor Description TestCasesIntegrationHgvsIns()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
test_02_hgvs_insertions_chr1()
Insertion / duplication issuesvoid
test_03_hgvs_insertions_chr3()
Insertion / duplication issuesvoid
test_04_hgvs_insertions_chr4()
Insertion / duplication issuesvoid
test_05_hgvs_insertions_chr19()
Insertion / duplication issuesvoid
test_06_hgvs_insertions_chr7()
Insertion / duplication issuesvoid
test_07_hgvs_insertions1()
This frameshift caused an exception while processing HGVS protein notation-
Methods inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
appyTranscript, build, buildAndCompare, buildEmbl, buildGeneBank, buildGff3AndCompare, buildGtfAndCompare, checkHgvs, checkNoChange, checkTranscriptError, compareHgvs, compareHgvs, compareVep, compareVepSO, init, loadSnpEffectPredictor, showTranscripts, showTranscripts, snpEffect, snpEffect, snpEffectCancer
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Method Detail
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test_02_hgvs_insertions_chr1
public void test_02_hgvs_insertions_chr1()
Insertion / duplication issues
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test_03_hgvs_insertions_chr3
public void test_03_hgvs_insertions_chr3()
Insertion / duplication issues
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test_04_hgvs_insertions_chr4
public void test_04_hgvs_insertions_chr4()
Insertion / duplication issues
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test_05_hgvs_insertions_chr19
public void test_05_hgvs_insertions_chr19()
Insertion / duplication issues
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test_06_hgvs_insertions_chr7
public void test_06_hgvs_insertions_chr7()
Insertion / duplication issues
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test_07_hgvs_insertions1
public void test_07_hgvs_insertions1()
This frameshift caused an exception while processing HGVS protein notation
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