Uses of Class
org.snpeff.interval.tree.IntervalForest
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Packages that use IntervalForest Package Description org.snpeff.interval org.snpeff.snpEffect org.snpeff.snpEffect.commandLine.eff -
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Uses of IntervalForest in org.snpeff.interval
Methods in org.snpeff.interval with parameters of type IntervalForest Modifier and Type Method Description Markers
Marker. query(IntervalForest intervalForest)
Return a collection of intervals that intersect this markerMarkers
VariantBnd. query(IntervalForest intervalForest)
Return a collection of intervals that intersect both ends of this variant -
Uses of IntervalForest in org.snpeff.snpEffect
Methods in org.snpeff.snpEffect that return IntervalForest Modifier and Type Method Description IntervalForest
SnpEffectPredictor. getIntervalForest()
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Uses of IntervalForest in org.snpeff.snpEffect.commandLine.eff
Constructors in org.snpeff.snpEffect.commandLine.eff with parameters of type IntervalForest Constructor Description MasterEff(int numWorkers, SnpEffCmdEff snpEffCmdEff, SnpEffectPredictor snpEffectPredictor, OutputFormatter outputFormatter, IntervalForest filterIntervals)
WorkerEff(SnpEffCmdEff snpEffCmdEff, SnpEffectPredictor snpEffectPredictor, OutputFormatter outputFormatter, IntervalForest filterIntervals)
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