Package org.snpeff.fastq
Class FastqTrimmerMedian
- java.lang.Object
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- org.snpeff.fastq.FastqTrimmer
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- org.snpeff.fastq.FastqTrimmerMedian
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- Direct Known Subclasses:
FastqTrimmerAdrian
public class FastqTrimmerMedian extends FastqTrimmer
Trim fastq sequence when median quality drops below a threshold- Author:
- pcingola
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Field Summary
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Fields inherited from class org.snpeff.fastq.FastqTrimmer
debug
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Constructor Summary
Constructors Constructor Description FastqTrimmerMedian(int qualityThreshold, int minBases, int runningMedianLength)
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Method Summary
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Methods inherited from class org.snpeff.fastq.FastqTrimmer
trim
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