Package org.snpeff.interval
Class CircularCorrection
- java.lang.Object
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- org.snpeff.interval.CircularCorrection
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public class CircularCorrection extends java.lang.Object
Correct circular genomic coordinates Nomenclature: We use coordinates at the beginning of the chromosme and negative coordinates
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Constructor Summary
Constructors Constructor Description CircularCorrection(Transcript tr)
CircularCorrection(Transcript tr, int chrLen)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description boolean
correct()
Return a circular corrected transcript or null if no correction is neededboolean
isCorrected()
void
setDebug(boolean debug)
java.lang.String
toString()
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Constructor Detail
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CircularCorrection
public CircularCorrection(Transcript tr)
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CircularCorrection
public CircularCorrection(Transcript tr, int chrLen)
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