Package org.snpeff.overlap
Class OverlapDnaSeq
- java.lang.Object
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- org.snpeff.overlap.Overlap<DnaSequence>
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- org.snpeff.overlap.OverlapDnaSeq
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public class OverlapDnaSeq extends Overlap<DnaSequence>
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Field Summary
Fields Modifier and Type Field Description static boolean
debug
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Constructor Summary
Constructors Constructor Description OverlapDnaSeq()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description int
getMinOverlap()
int
overlap(DnaSequence seq1, DnaSequence seq2)
Calculate the best overlap between two sequencesvoid
setMinOverlap(int minOverlap)
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Methods inherited from class org.snpeff.overlap.Overlap
getBestOffset, getBestScore
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Method Detail
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getMinOverlap
public int getMinOverlap()
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overlap
public int overlap(DnaSequence seq1, DnaSequence seq2)
Description copied from class:Overlap
Calculate the best overlap between two sequences- Specified by:
overlap
in classOverlap<DnaSequence>
- Returns:
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setMinOverlap
public void setMinOverlap(int minOverlap)
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