Package org.snpeff.interval
Enum TranscriptSupportLevel
- java.lang.Object
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- java.lang.Enum<TranscriptSupportLevel>
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- org.snpeff.interval.TranscriptSupportLevel
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- All Implemented Interfaces:
java.io.Serializable
,java.lang.Comparable<TranscriptSupportLevel>
public enum TranscriptSupportLevel extends java.lang.Enum<TranscriptSupportLevel>
Transcript level support Reference: http://useast.ensembl.org/Help/Glossary?id=492;redirect=no- Author:
- pcingola
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Enum Constant Summary
Enum Constants Enum Constant Description TSL_1
TSL_2
TSL_3
TSL_4
TSL_5
TSL_NA
The transcript was not analyzed for one of the following reasons: pseudo-gene annotation, including transcribed pseudo-genes human leukocyte antigen (HLA) transcript immunoglobin gene transcript T-cell receptor transcript single-exon transcript (will be included in a future version)
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Field Summary
Fields Modifier and Type Field Description static int
TSL_NULL_VALUE
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Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static TranscriptSupportLevel
parse(java.lang.String str)
static int
tsl(TranscriptSupportLevel tsl)
Return TSL level (-1 if not available / invalid)static TranscriptSupportLevel
valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name.static TranscriptSupportLevel[]
values()
Returns an array containing the constants of this enum type, in the order they are declared.
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Enum Constant Detail
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TSL_1
public static final TranscriptSupportLevel TSL_1
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TSL_2
public static final TranscriptSupportLevel TSL_2
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TSL_3
public static final TranscriptSupportLevel TSL_3
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TSL_4
public static final TranscriptSupportLevel TSL_4
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TSL_5
public static final TranscriptSupportLevel TSL_5
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TSL_NA
public static final TranscriptSupportLevel TSL_NA
The transcript was not analyzed for one of the following reasons: pseudo-gene annotation, including transcribed pseudo-genes human leukocyte antigen (HLA) transcript immunoglobin gene transcript T-cell receptor transcript single-exon transcript (will be included in a future version)
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Field Detail
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TSL_NULL_VALUE
public static final int TSL_NULL_VALUE
- See Also:
- Constant Field Values
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Method Detail
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values
public static TranscriptSupportLevel[] values()
Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:for (TranscriptSupportLevel c : TranscriptSupportLevel.values()) System.out.println(c);
- Returns:
- an array containing the constants of this enum type, in the order they are declared
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valueOf
public static TranscriptSupportLevel valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)- Parameters:
name
- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
java.lang.IllegalArgumentException
- if this enum type has no constant with the specified namejava.lang.NullPointerException
- if the argument is null
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parse
public static TranscriptSupportLevel parse(java.lang.String str)
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tsl
public static int tsl(TranscriptSupportLevel tsl)
Return TSL level (-1 if not available / invalid)
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