Package org.snpeff.stats
Class GenotypeStats
- java.lang.Object
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- org.snpeff.stats.GenotypeStats
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- All Implemented Interfaces:
SamplingStats<VcfEntry>
public class GenotypeStats extends java.lang.Object implements SamplingStats<VcfEntry>
Calculate statistics on genotype- Author:
- pablocingolani
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Constructor Summary
Constructors Constructor Description GenotypeStats()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description IntStats
getAlleleCount()
java.lang.String
getAlleleCountHistoUrl()
IntStats
getAlleleFrequency()
java.lang.String
getAlleleFrequencyHistoUrl()
java.lang.String
getHetBySampleUrl()
java.lang.String
getHomBySampleUrl()
java.lang.String
getHomHetTable()
java.lang.String
getMissingBySampleUrl()
boolean
hasData()
Does this statistic have any data?void
sample(VcfEntry vcfEntry)
Update countersjava.lang.String
toString()
Show results to stdout
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Method Detail
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getAlleleCount
public IntStats getAlleleCount()
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getAlleleCountHistoUrl
public java.lang.String getAlleleCountHistoUrl()
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getAlleleFrequency
public IntStats getAlleleFrequency()
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getAlleleFrequencyHistoUrl
public java.lang.String getAlleleFrequencyHistoUrl()
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getHetBySampleUrl
public java.lang.String getHetBySampleUrl()
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getHomBySampleUrl
public java.lang.String getHomBySampleUrl()
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getHomHetTable
public java.lang.String getHomHetTable()
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getMissingBySampleUrl
public java.lang.String getMissingBySampleUrl()
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hasData
public boolean hasData()
Description copied from interface:SamplingStats
Does this statistic have any data?- Specified by:
hasData
in interfaceSamplingStats<VcfEntry>
- Returns:
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sample
public void sample(VcfEntry vcfEntry)
Update counters- Specified by:
sample
in interfaceSamplingStats<VcfEntry>
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toString
public java.lang.String toString()
Show results to stdout- Overrides:
toString
in classjava.lang.Object
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