Class CircularCorrection


  • public class CircularCorrection
    extends java.lang.Object
    Correct circular genomic coordinates Nomenclature: We use coordinates at the beginning of the chromosme and negative coordinates
    • Constructor Detail

      • CircularCorrection

        public CircularCorrection​(Transcript tr)
      • CircularCorrection

        public CircularCorrection​(Transcript tr,
                                  int chrLen)
    • Method Detail

      • correct

        public boolean correct()
        Return a circular corrected transcript or null if no correction is needed
      • isCorrected

        public boolean isCorrected()
      • setDebug

        public void setDebug​(boolean debug)
      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object