Package org.snpeff.vcf
Class PedigreeEnrty
- java.lang.Object
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- org.snpeff.vcf.PedigreeEnrty
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public class PedigreeEnrty extends java.lang.Object
Pedigree entry in a VCF file header E.g.: ##PEDIGREE=or ##PEDIGREE= - Author:
- pcingola
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Constructor Summary
Constructors Constructor Description PedigreeEnrty(java.lang.String original, java.lang.String derived)
PedigreeEnrty(java.lang.String father, java.lang.String mother, java.lang.String child)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description java.lang.String
getDerived()
int
getDerivedNum()
java.lang.String
getOriginal()
int
getOriginalNum()
boolean
isDerived()
Is this an 'Original-Derived' entry type?void
sampleNumbers(java.util.List<java.lang.String> sampleNames)
Find sample numbers in a list of sample namesjava.lang.String
toString()
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Method Detail
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getDerived
public java.lang.String getDerived()
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getDerivedNum
public int getDerivedNum()
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getOriginal
public java.lang.String getOriginal()
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getOriginalNum
public int getOriginalNum()
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isDerived
public boolean isDerived()
Is this an 'Original-Derived' entry type?- Returns:
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sampleNumbers
public void sampleNumbers(java.util.List<java.lang.String> sampleNames)
Find sample numbers in a list of sample names- Parameters:
sampleNames
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toString
public java.lang.String toString()
- Overrides:
toString
in classjava.lang.Object
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