Class TabixIterator

  • All Implemented Interfaces:
    java.lang.Iterable<java.lang.String>, java.util.Iterator<java.lang.String>

    public class TabixIterator
    extends java.lang.Object
    implements java.util.Iterator<java.lang.String>, java.lang.Iterable<java.lang.String>
    Iterate on a result from TabixReader.query()
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      boolean hasNext()  
      java.util.Iterator<java.lang.String> iterator()  
      java.lang.String next()  
      void remove()  
      void setDebug​(boolean debug)  
      void setReadBlock​(boolean readBlock)  
      void setShowHeader​(boolean showHeader)  
      java.lang.String toString()  
      java.lang.String toStringBlocks()  
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
      • Methods inherited from interface java.lang.Iterable

        forEach, spliterator
      • Methods inherited from interface java.util.Iterator

        forEachRemaining
    • Constructor Detail

      • TabixIterator

        public TabixIterator​(TabixReader tabixReader,
                             int _tid,
                             int _beg,
                             int _end,
                             TPair64[] _off)
    • Method Detail

      • hasNext

        public boolean hasNext()
        Specified by:
        hasNext in interface java.util.Iterator<java.lang.String>
      • iterator

        public java.util.Iterator<java.lang.String> iterator()
        Specified by:
        iterator in interface java.lang.Iterable<java.lang.String>
      • next

        public java.lang.String next()
        Specified by:
        next in interface java.util.Iterator<java.lang.String>
      • remove

        public void remove()
        Specified by:
        remove in interface java.util.Iterator<java.lang.String>
      • setDebug

        public void setDebug​(boolean debug)
      • setReadBlock

        public void setReadBlock​(boolean readBlock)
      • setShowHeader

        public void setShowHeader​(boolean showHeader)
      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object
      • toStringBlocks

        public java.lang.String toStringBlocks()