Package org.snpeff.vcf
Class VcfNmd
- java.lang.Object
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- org.snpeff.vcf.VcfLof
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- org.snpeff.vcf.VcfNmd
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public class VcfNmd extends VcfLof
An 'NMD' entry in a vcf line- Author:
- pablocingolani
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Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static int
fieldNum(java.lang.String name)
Convert from field name to field number-
Methods inherited from class org.snpeff.vcf.VcfLof
getGeneId, getGeneName, getNumTranscripts, getPercentAffected, getPercentAffectedStr, getVcfEntry, toString
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Constructor Detail
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VcfNmd
public VcfNmd(Gene gene, double percentAffected)
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VcfNmd
public VcfNmd(java.lang.String nmdStr)
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VcfNmd
public VcfNmd(java.lang.String geneName, java.lang.String geneId, int numTranscripts, double percentAffected)
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VcfNmd
public VcfNmd(VcfEntry vcfEntry, java.lang.String nmdStr)
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