Class TestCasesIntegrationProteinInteraction


  • public class TestCasesIntegrationProteinInteraction
    extends TestCasesIntegrationBase
    Test cases for annotation of protein interaction loci
    • Constructor Detail

      • TestCasesIntegrationProteinInteraction

        public TestCasesIntegrationProteinInteraction()
    • Method Detail

      • test_01_within_protein_interactions

        public void test_01_within_protein_interactions()
        Annotate within protein interaction
      • test_02_protein_protein_interactions

        public void test_02_protein_protein_interactions()
        Annotate protein-protein interactions
      • test_03_protein_protein_interactions_hgvs

        public void test_03_protein_protein_interactions_hgvs()
        Annotate protein-structural interaction Make sure that the HGVS notation positions (DNA and Protein) are consistent. When the variant is realigned, the protein-interaction annotation should not appear