Class TestCasesIntegrationApply


  • public class TestCasesIntegrationApply
    extends TestCasesIntegrationBase
    Test 'apply' method (apply variant to marker)
    Author:
    pcingola
    • Field Detail

      • SHOW_EVERY

        public static int SHOW_EVERY
    • Constructor Detail

      • TestCasesIntegrationApply

        public TestCasesIntegrationApply()
    • Method Detail

      • test_01_Exon_SNPs

        public void test_01_Exon_SNPs()
        Test 'apply' on exons (test sequence changes) Only using SNPs variants
      • test_02_Exon_INS

        public void test_02_Exon_INS()
        Test 'apply' on exons (test sequence changes) Only using insertion variants
      • test_03_Exon_DEL

        public void test_03_Exon_DEL()
        Test 'apply' on exons (test sequence changes) Only using deletions variants
      • test_04_Exon_MNP

        public void test_04_Exon_MNP()
        Test 'apply' on exons (test sequence changes) Only using deletions variants
      • test_apply_05_delete_whole_exon

        public void test_apply_05_delete_whole_exon()
        Exon completely removed by a deletion. Bug triggers a null pointer on 'Transcript.apply()': Fixed
      • test_apply_06_delete_upstream

        public void test_apply_06_delete_upstream()
        Upstream region is completely removed by a deletion. Bug triggers a null pointer: Fixed
      • test_apply_07_delete_upstream

        public void test_apply_07_delete_upstream()
        Upstream region is completely removed by a deletion. Bug triggers a null pointer: Fixed