Class SamHeader

  • All Implemented Interfaces:
    java.lang.Iterable<java.lang.String>

    public class SamHeader
    extends java.lang.Object
    implements java.lang.Iterable<java.lang.String>
    Sam header
    Author:
    pcingola
    • Constructor Summary

      Constructors 
      Constructor Description
      SamHeader()  
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void add​(SamHeaderRecord samHeaderRecord)
      Add a record to the header
      void addHeaderRecord​(java.lang.String line)  
      java.util.ArrayList<SamHeaderRecord> getRecords​(java.lang.String recordType)
      Get a list of records for this 'recordType'
      java.util.Iterator<java.lang.String> iterator()  
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
      • Methods inherited from interface java.lang.Iterable

        forEach, spliterator
    • Constructor Detail

      • SamHeader

        public SamHeader()
    • Method Detail

      • add

        public void add​(SamHeaderRecord samHeaderRecord)
        Add a record to the header
      • addHeaderRecord

        public void addHeaderRecord​(java.lang.String line)
      • getRecords

        public java.util.ArrayList<SamHeaderRecord> getRecords​(java.lang.String recordType)
        Get a list of records for this 'recordType'
        Parameters:
        recordType -
        Returns:
        A new empty list is created if no records are available
      • iterator

        public java.util.Iterator<java.lang.String> iterator()
        Specified by:
        iterator in interface java.lang.Iterable<java.lang.String>