Package org.snpeff
Class PromoterSequences
- java.lang.Object
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- org.snpeff.PromoterSequences
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public class PromoterSequences extends java.lang.Object
Get promoter sequences from genes- Author:
- pablocingolani
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Field Summary
Fields Modifier and Type Field Description static java.lang.String
HOME
static int
LEN_AFTER_TSS
static int
LEN_UPSTREAM
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Constructor Summary
Constructors Constructor Description PromoterSequences(java.lang.String genomeName, java.lang.String fastaFile, java.util.List<java.lang.String> geneIds)
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description static void
main(java.lang.String[] args)
void
run()
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