Package org.snpeff.complexity
Class SequenceComplexity
- java.lang.Object
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- org.snpeff.complexity.SequenceComplexity
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public class SequenceComplexity extends java.lang.Object
Measures the complexity of a sequence Ideally we'd like to measure the Kolmogorov complexity of the sequence. Unfortunately it is not a computable function (see http://en.wikipedia.org/wiki/Kolmogorov_complexity)- Author:
- pcingola
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Constructor Summary
Constructors Constructor Description SequenceComplexity()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description int
complexity(java.lang.String seq)
Measure string's complexitydouble
ratio(java.lang.String seq)
Measure string's complexity ratio.
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