Class IdMapper


  • public class IdMapper
    extends java.lang.Object
    Map IDs
    Author:
    pcingola
    • Constructor Detail

      • IdMapper

        public IdMapper()
    • Method Detail

      • transcriptIdNoVersion

        public static java.lang.String transcriptIdNoVersion​(java.lang.String trId)
        Remove version form transcript ID
      • transcriptIds

        public static java.util.Set<java.lang.String> transcriptIds​(java.util.List<IdMapperEntry> ids)
      • addAll

        public void addAll​(java.util.Collection<IdMapperEntry> imes)
      • getByPdbId

        public java.util.List<IdMapperEntry> getByPdbId​(java.lang.String id)
      • getByPdbId

        public java.util.List<IdMapperEntry> getByPdbId​(java.lang.String id,
                                                        java.lang.String chainId)
      • getByTrId

        public java.util.List<IdMapperEntry> getByTrId​(java.lang.String id)
      • getEntries

        public java.util.Collection<IdMapperEntry> getEntries()
      • load

        public void load​(java.lang.String fileName)
      • setVerbose

        public void setVerbose​(boolean verbose)
      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object