SeqAn3  3.2.0-rc.1
The Modern C++ library for sequence analysis.
alignment_algorithm_state.hpp
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1 // -----------------------------------------------------------------------------------------------------
2 // Copyright (c) 2006-2022, Knut Reinert & Freie Universität Berlin
3 // Copyright (c) 2016-2022, Knut Reinert & MPI für molekulare Genetik
4 // This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5 // shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
6 // -----------------------------------------------------------------------------------------------------
7 
13 #pragma once
14 
18 
19 namespace seqan3::detail
20 {
32 template <typename score_type>
33  requires arithmetic<score_type> || simd_concept<score_type>
34 struct alignment_algorithm_state
35 {
37  score_type gap_extension_score{};
39  score_type gap_open_score{};
41  alignment_optimum<score_type> optimum{};
42 
44  constexpr void reset_optimum() noexcept
45  {
46  optimum = alignment_optimum<score_type>{};
47  }
48 };
49 
56 template <typename score_type>
57 alignment_algorithm_state(score_type, score_type) -> alignment_algorithm_state<score_type>;
59 } // namespace seqan3::detail
Provides seqan3::detail::alignment_optimum.
requires requires
The rank_type of the semi-alphabet; defined as the return type of seqan3::to_rank....
Definition: alphabet/concept.hpp:164
A type that satisfies std::is_arithmetic_v<t>.
Provides concepts that do not have equivalents in C++20.
Provides seqan3::simd::simd_concept.