A CRTP-base that refines seqan3::alphabet_base and is used by the quality alphabets. More...
#include <seqan3/alphabet/quality/phred_base.hpp>
Public Types | |
Member types | |
using | phred_type = int8_t |
The integer representation of the quality score. More... | |
Write functions | |
Return the alphabet's value in Phred score representation. \see quality \htmlonly<dl class="stable-api">This entity is stable. Since version 3.1.</dl>\endhtmlonly | |
static constexpr std::array< phred_type, alphabet_size > | rank_to_phred |
Assign from the numeric Phred score value. More... | |
static constexpr rank_type | char_to_rank (char_type const chr) |
static constexpr char_type | rank_to_char (rank_type const rank) |
Additional Inherited Members | |
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constexpr | alphabet_base () noexcept=default |
Defaulted. | |
constexpr | alphabet_base (alphabet_base const &) noexcept=default |
Defaulted. | |
constexpr | alphabet_base (alphabet_base &&) noexcept=default |
Defaulted. | |
constexpr alphabet_base & | operator= (alphabet_base const &) noexcept=default |
Defaulted. | |
constexpr alphabet_base & | operator= (alphabet_base &&) noexcept=default |
Defaulted. | |
~alphabet_base () noexcept=default | |
Defaulted. | |
constexpr char_type | to_char () const noexcept requires(!std |
Return the letter as a character of char_type. More... | |
constexpr rank_type | to_rank () const noexcept |
Return the letter's numeric value (rank in the alphabet). More... | |
constexpr derived_type & | assign_char (char_type const chr) noexcept requires(!std |
Assign from a character, implicitly converts invalid characters. More... | |
constexpr derived_type & | assign_rank (rank_type const c) noexcept |
Assign from a numeric value. More... | |
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static constexpr detail::min_viable_uint_t< size > | alphabet_size |
The size of the alphabet, i.e. the number of different values it can take. More... | |
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using | char_type = std::conditional_t< std::same_as< char, void >, char, char > |
The char representation; conditional needed to make semi alphabet definitions legal. More... | |
using | rank_type = detail::min_viable_uint_t< size - 1 > |
The type of the alphabet when represented as a number (e.g. via to_rank()). More... | |
A CRTP-base that refines seqan3::alphabet_base and is used by the quality alphabets.
derived_type | The CRTP parameter type. |
size | The size of the alphabet. |
using seqan3::phred_base< derived_type, size >::phred_type = int8_t |
The integer representation of the quality score.
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inlinestaticconstexpr |
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inlinestaticconstexpr |
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staticconstexpr |
Assign from the numeric Phred score value.
\details Satisfies the seqan3::writable_quality_alphabet requirement via the seqan3::assign_rank_to() wrapper. \see quality ### Complexity Constant. \htmlonly<dl class="stable-api">This entity is stable. Since version 3.1.</dl>\endhtmlonly
Rank to phred conversion table.