21 #define SEQAN3_STR_HELPER(x) #x
22 #define SEQAN3_STR(x) SEQAN3_STR_HELPER(x)
31 #ifndef SEQAN3_DOXYGEN_ONLY
32 # define SEQAN3_DOXYGEN_ONLY(x)
39 #if defined(__GNUC__) && (__GNUC__ < 10)
40 # error "SeqAn 3.1.x is the last version that supports GCC 7, 8, and 9. Please upgrade your compiler or use 3.1.x."
43 #if SEQAN3_DOXYGEN_ONLY(1) 0
45 # define SEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC
48 #ifndef SEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC
49 # if defined(__GNUC__) && (__GNUC__ > 12)
51 "Your compiler is newer than the latest supported compiler of this SeqAn version (gcc-12). It might be that SeqAn does not compile due to this. You can disable this warning by setting -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC."
62 # if (__cplusplus < 201709)
63 # error "SeqAn3 requires C++20, make sure that you have set -std=c++20."
66 # error "This is not a C++ compiler."
69 #if __has_include(<version>)
78 #if __has_include(<seqan3/version.hpp>)
81 # error SeqAn3 include directory not set correctly. Forgot to add -I ${INSTALLDIR}/include to your CXXFLAGS?
85 #if __has_include(<sdsl/version.hpp>)
86 # include <sdsl/version.hpp>
87 static_assert(sdsl::sdsl_version_major == 3,
"Only version 3 of the SDSL is supported by SeqAn3.");
89 # error The sdsl library was not included correctly. Forgot to add -I ${INSTALLDIR}/include to your CXXFLAGS?
97 #ifndef SEQAN3_WITH_CEREAL
98 # if __has_include(<cereal/cereal.hpp>)
99 # define SEQAN3_WITH_CEREAL 1
101 # define SEQAN3_WITH_CEREAL 0
103 #elif SEQAN3_WITH_CEREAL != 0
104 # if !__has_include(<cereal/cereal.hpp>)
105 # error Cereal was marked as required, but not found!
110 #if !SEQAN3_WITH_CEREAL
116 # define CEREAL_SERIALIZE_FUNCTION_NAME serialize
117 # define CEREAL_LOAD_FUNCTION_NAME load
118 # define CEREAL_SAVE_FUNCTION_NAME save
119 # define CEREAL_LOAD_MINIMAL_FUNCTION_NAME load_minimal
120 # define CEREAL_SAVE_MINIMAL_FUNCTION_NAME save_minimal
130 #ifndef SEQAN3_WITH_LEMON
131 # if __has_include(<lemon/config.h>)
132 # define SEQAN3_WITH_LEMON 1
134 # define SEQAN3_WITH_LEMON 0
136 #elif SEQAN3_WITH_LEMON != 0
137 # if !__has_include(<lemon/config.h>)
138 # error Lemon was marked as required, but not found!
141 #if SEQAN3_WITH_LEMON == 1
142 # define LEMON_HAVE_LONG_LONG 1
143 # define LEMON_CXX11 1
144 # if defined(__unix__) || defined(__APPLE__)
145 # define LEMON_USE_PTHREAD 1
146 # define LEMON_USE_WIN32_THREADS 0
147 # define LEMON_WIN32 0
149 # define LEMON_USE_PTHREAD 0
150 # define LEMON_USE_WIN32_THREADS 1
151 # define LEMON_WIN32 1
162 #ifndef SEQAN3_PRAGMA
163 # define SEQAN3_PRAGMA(non_string_literal) _Pragma(# non_string_literal)
167 #ifndef SEQAN3_DEPRECATED_HEADER
168 # ifndef SEQAN3_DISABLE_DEPRECATED_WARNINGS
169 # define SEQAN3_DEPRECATED_HEADER(message) SEQAN3_PRAGMA(GCC warning message)
171 # define SEQAN3_DEPRECATED_HEADER(message)
176 #ifndef SEQAN3_REMOVE_DEPRECATED_330
177 # ifndef SEQAN3_DEPRECATED_330
178 # ifndef SEQAN3_DISABLE_DEPRECATED_WARNINGS
179 # define SEQAN3_DEPRECATED_330 \
180 [[deprecated("This will be removed in SeqAn-3.3.0; please see the documentation.")]]
182 # define SEQAN3_DEPRECATED_330
199 #if defined(__GNUC__) && (__GNUC__ == 10 && __GNUC_MINOR__ <= 2)
200 # pragma GCC warning \
201 "Be aware that gcc 10.0, 10.1 and 10.2 are known to have several bugs that might make SeqAn3 fail to compile. Please use gcc >= 10.3."
204 #ifndef SEQAN3_WORKAROUND_VIEW_PERFORMANCE
206 # define SEQAN3_WORKAROUND_VIEW_PERFORMANCE 1
210 #ifndef SEQAN3_WORKAROUND_GCC_96070
211 # if defined(__GNUC__) && (__GNUC__ == 10 && __GNUC_MINOR__ < 4)
212 # define SEQAN3_WORKAROUND_GCC_96070 1
214 # define SEQAN3_WORKAROUND_GCC_96070 0
220 #ifndef SEQAN3_WORKAROUND_GCC_PIPEABLE_CONFIG_CONCEPT
221 # if defined(__GNUC__) && (__GNUC__ < 11)
222 # define SEQAN3_WORKAROUND_GCC_PIPEABLE_CONFIG_CONCEPT 1
224 # define SEQAN3_WORKAROUND_GCC_PIPEABLE_CONFIG_CONCEPT 0
229 #ifndef SEQAN3_WORKAROUND_DEFAULT_CONSTRUCTIBLE_VIEW
230 # if defined(__GNUC__) && (__GNUC__ < 12)
231 # define SEQAN3_WORKAROUND_DEFAULT_CONSTRUCTIBLE_VIEW 1
233 # define SEQAN3_WORKAROUND_DEFAULT_CONSTRUCTIBLE_VIEW 0
239 #ifndef SEQAN3_WORKAROUND_GCC_100139
240 # if defined(__GNUC__) && (__GNUC__ < 12)
241 # define SEQAN3_WORKAROUND_GCC_100139 1
243 # define SEQAN3_WORKAROUND_GCC_100139 0
250 #ifndef SEQAN3_WORKAROUND_GCC_BOGUS_MEMCPY
251 # if defined(__GNUC__) && (__GNUC__ == 12 && __GNUC_MINOR__ < 2)
252 # define SEQAN3_WORKAROUND_GCC_BOGUS_MEMCPY 1
254 # define SEQAN3_WORKAROUND_GCC_BOGUS_MEMCPY 0
268 #ifndef SEQAN3_WORKAROUND_GCC_NO_CXX11_ABI
269 # if defined(_GLIBCXX_USE_CXX11_ABI) && _GLIBCXX_USE_CXX11_ABI == 0
270 # define SEQAN3_WORKAROUND_GCC_NO_CXX11_ABI 1
272 # define SEQAN3_WORKAROUND_GCC_NO_CXX11_ABI 0
276 #if SEQAN3_DOXYGEN_ONLY(1) 0
278 # define SEQAN3_DISABLE_LEGACY_STD_DIAGNOSTIC
281 #if defined(_GLIBCXX_USE_CXX11_ABI) && _GLIBCXX_USE_CXX11_ABI == 0
282 # ifndef SEQAN3_DISABLE_LEGACY_STD_DIAGNOSTIC
284 "We do not actively support compiler that have -D_GLIBCXX_USE_CXX11_ABI=0 set, and it might be that SeqAn does not compile due to this. It is known that all compiler of CentOS 7 / RHEL 7 set this flag by default (and that it cannot be overridden!). Note that these versions of the OSes are community-supported (see https://docs.seqan.de/seqan/3-master-user/about_api.html#platform_stability for more details). You can disable this warning by setting -DSEQAN3_DISABLE_LEGACY_STD_DIAGNOSTIC."
294 #undef SEQAN3_STR_HELPER
307 template <
class Container>
308 class back_insert_iterator;
310 template <
class Container>
311 constexpr back_insert_iterator<Container>
back_inserter(Container & c);
313 template <
class CharT>
316 template <
class T,
class CharT,
class Traits>
317 class ostream_iterator;
319 template <
class CharT,
class Traits>
320 class ostreambuf_iterator;
328 #ifndef SEQAN3_CPP20_ODR
329 # define SEQAN3_CPP20_ODR 1
330 template <
class Container>
337 template <
class T,
class CharT =
char,
class Traits = std::
char_traits<CharT>>
340 template <
class CharT,
class Traits = std::
char_traits<CharT>>
T back_inserter(T... args)
SeqAn specific customisations in the standard namespace.
Provides SeqAn version macros and global variables.