Class Hierarchy
- java.lang.Object
- java.util.AbstractCollection<E> (implements java.util.Collection<E>)
- java.util.AbstractSet<E> (implements java.util.Set<E>)
- java.util.TreeSet<E> (implements java.lang.Cloneable, java.util.NavigableSet<E>, java.io.Serializable)
- picard.fingerprint.FingerprintUtils.VariantContextSet
- java.util.TreeSet<E> (implements java.lang.Cloneable, java.util.NavigableSet<E>, java.io.Serializable)
- java.util.AbstractSet<E> (implements java.util.Set<E>)
- java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
- java.util.TreeMap<K,V> (implements java.lang.Cloneable, java.util.NavigableMap<K,V>, java.io.Serializable)
- picard.fingerprint.Fingerprint
- java.util.TreeMap<K,V> (implements java.lang.Cloneable, java.util.NavigableMap<K,V>, java.io.Serializable)
- picard.cmdline.CommandLineProgram
- picard.fingerprint.CalculateFingerprintMetrics
- picard.fingerprint.CheckFingerprint
- picard.fingerprint.ClusterCrosscheckMetrics
- picard.fingerprint.ConvertHaplotypeDatabaseToVcf
- picard.fingerprint.CrosscheckFingerprints
- picard.fingerprint.CrosscheckReadGroupFingerprints
- picard.fingerprint.ExtractFingerprint
- picard.fingerprint.IdentifyContaminant
- picard.fingerprint.LiftOverHaplotypeMap
- picard.fingerprint.FingerprintChecker
- picard.fingerprint.FingerprintIdDetails
- picard.fingerprint.FingerprintResults
- picard.fingerprint.FingerprintUtils
- picard.fingerprint.HaplotypeBlock (implements java.lang.Comparable<T>)
- picard.fingerprint.HaplotypeMap
- picard.fingerprint.HaplotypeProbabilities
- picard.fingerprint.CappedHaplotypeProbabilities
- picard.fingerprint.HaplotypeProbabilitiesFromGenotype
- picard.fingerprint.HaplotypeProbabilitiesFromGenotypeLikelihoods
- picard.fingerprint.HaplotypeProbabilitiesFromSequence
- picard.fingerprint.HaplotypeProbabilitiesFromContaminatorSequence
- picard.fingerprint.HaplotypeProbabilityOfNormalGivenTumor
- picard.fingerprint.MatchResults (implements java.lang.Comparable<T>)
- htsjdk.samtools.metrics.MetricBase
- picard.fingerprint.CrosscheckMetric
- picard.fingerprint.ClusteredCrosscheckMetric
- picard.fingerprint.FingerprintMetrics
- picard.fingerprint.CrosscheckMetric
- picard.fingerprint.Snp (implements java.lang.Comparable<T>)
- java.util.AbstractCollection<E> (implements java.util.Collection<E>)
Enum Hierarchy
- java.lang.Object
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
- picard.fingerprint.CrosscheckMetric.DataType
- picard.fingerprint.CrosscheckMetric.FingerprintResult
- picard.fingerprint.DiploidGenotype
- picard.fingerprint.DiploidHaplotype
- picard.fingerprint.HaplotypeProbabilities.Genotype
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)