Package picard.sam.SamErrorMetric
Interface ReadBaseStratification.RecordAndOffsetStratifier<T extends Comparable<T>>
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- All Known Implementing Classes:
ReadBaseStratification.BinnedReadCycleStratifier
,ReadBaseStratification.CigarOperatorsInReadStratifier
,ReadBaseStratification.CollectionStratifier
,ReadBaseStratification.ConsensusStratifier
,ReadBaseStratification.FlowCellTileStratifier
,ReadBaseStratification.FlowCellXStratifier
,ReadBaseStratification.FlowCellYStratifier
,ReadBaseStratification.GCContentStratifier
,ReadBaseStratification.IndelLengthStratifier
,ReadBaseStratification.IndelsInReadStratifier
,ReadBaseStratification.LongShortHomopolymerStratifier
,ReadBaseStratification.MismatchesInReadStratifier
,ReadBaseStratification.NsInReadStratifier
,ReadBaseStratification.PairStratifier
- Enclosing class:
- ReadBaseStratification
public static interface ReadBaseStratification.RecordAndOffsetStratifier<T extends Comparable<T>>
The main interface for a stratifier. The Stratifier needs to be able to ake aRecordAndOffset
and return a value of type T. It also needs to have a suffix for automatically generating metrics file suffixes.
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description String
getSuffix()
T
stratify(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo)
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