Package picard.arrays
Class BafRegressMetrics
- java.lang.Object
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- htsjdk.samtools.metrics.MetricBase
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- picard.arrays.BafRegressMetrics
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@DocumentedFeature(groupName="Metrics", summary="Metrics") public class BafRegressMetrics extends htsjdk.samtools.metrics.MetricBase
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Field Summary
Fields Modifier and Type Field Description double
CALL_RATE
The call rate of the sample (number of non-missing genotypes)double
ESTIMATE
The estimate of contamination from the model (on the 0.0-1.0 scale)double
LOG10_PVAL
The log p-value of the estimateint
NHOM
The number of homozygous genotypes used to fit the modeldouble
PVAL
The p-value of the estimateString
SAMPLE
The sample namedouble
STDERR
The standard error of the estimatedouble
TVAL
The test statistic for the estimate
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Constructor Summary
Constructors Constructor Description BafRegressMetrics()
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Field Detail
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SAMPLE
public String SAMPLE
The sample name
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ESTIMATE
public double ESTIMATE
The estimate of contamination from the model (on the 0.0-1.0 scale)
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STDERR
public double STDERR
The standard error of the estimate
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TVAL
public double TVAL
The test statistic for the estimate
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PVAL
public double PVAL
The p-value of the estimate
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LOG10_PVAL
public double LOG10_PVAL
The log p-value of the estimate
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CALL_RATE
public double CALL_RATE
The call rate of the sample (number of non-missing genotypes)
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NHOM
public int NHOM
The number of homozygous genotypes used to fit the model
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