Class CollectWgsMetrics.WgsMetricsCollector

    • Constructor Detail

      • WgsMetricsCollector

        public WgsMetricsCollector​(CollectWgsMetrics metrics,
                                   int coverageCap,
                                   htsjdk.samtools.util.IntervalList intervals)
    • Method Detail

      • addInfo

        public void addInfo​(htsjdk.samtools.util.AbstractLocusInfo<htsjdk.samtools.util.SamLocusIterator.RecordAndOffset> info,
                            htsjdk.samtools.reference.ReferenceSequence ref,
                            boolean referenceBaseN)
        Description copied from class: AbstractWgsMetricsCollector
        Accumulates the data from AbstractLocusInfo in inner structures
        Specified by:
        addInfo in class AbstractWgsMetricsCollector<htsjdk.samtools.util.SamLocusIterator.RecordAndOffset>
        Parameters:
        info - AbstractLocusInfo with aligned to reference position reads
        ref - ReferenceSequence
        referenceBaseN - true if current the value of reference base represents a no call