Package picard.sam.util
Class PhysicalLocationShort
- java.lang.Object
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- picard.sam.util.PhysicalLocationInt
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- picard.sam.util.PhysicalLocationShort
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- All Implemented Interfaces:
Serializable
,PhysicalLocation
- Direct Known Subclasses:
PhysicalLocationForMateCigar
,ReadEnds
public class PhysicalLocationShort extends PhysicalLocationInt
Small class that provides access to the physical location information about a cluster. All values should be defaulted to -1 if unavailable. Tile should only allow non-zero positive integers, x and y coordinates must be non-negative. This is different from PhysicalLocationInt in that the x and y positions are shorts, not ints thus, they may overflow within a HiSeqX tile.- See Also:
- Serialized Form
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Field Summary
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Fields inherited from class picard.sam.util.PhysicalLocationInt
tile, x, y
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Fields inherited from interface picard.sam.util.PhysicalLocation
NO_VALUE
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Constructor Summary
Constructors Constructor Description PhysicalLocationShort()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
setX(int x)
void
setY(int y)
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Methods inherited from class picard.sam.util.PhysicalLocationInt
getLibraryId, getReadGroup, getTile, getX, getY, setLibraryId, setReadGroup, setTile
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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Methods inherited from interface picard.sam.util.PhysicalLocation
hasLocation
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Method Detail
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setX
public void setX(int x)
- Specified by:
setX
in interfacePhysicalLocation
- Overrides:
setX
in classPhysicalLocationInt
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setY
public void setY(int y)
- Specified by:
setY
in interfacePhysicalLocation
- Overrides:
setY
in classPhysicalLocationInt
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