Package picard.analysis.artifacts
-
Class Summary Class Description CollectSequencingArtifactMetrics Quantify substitution errors caused by mismatched base pairings during various stages of sample / library prep.ConvertSequencingArtifactToOxoG ErrorSummaryMetrics Summary metrics produced byCollectSequencingArtifactMetrics
as a roll up of the context-specific error rates, to provide global error rates per type of base substitution.SequencingArtifactMetrics SequencingArtifactMetrics.BaitBiasDetailMetrics Bait bias artifacts broken down by context.SequencingArtifactMetrics.BaitBiasSummaryMetrics Summary analysis of a single bait bias artifact, also known as a reference bias artifact.SequencingArtifactMetrics.PreAdapterDetailMetrics Pre-adapter artifacts broken down by context.SequencingArtifactMetrics.PreAdapterSummaryMetrics Summary analysis of a single pre-adapter artifact. -
Enum Summary Enum Description Transition Enum representation of a transition from one base to any other.Transition.Base