Class InfiniumEGTFile

  • All Implemented Interfaces:
    AutoCloseable

    public class InfiniumEGTFile
    extends InfiniumDataFile
    implements AutoCloseable
    A class to parse the contents of an Illumina Infinium cluster (EGT) file A cluster file contains information about the clustering information used in mapping red / green intensity information to genotype calls
    • Field Detail

      • n

        public int[][] n
      • meanR

        public float[][] meanR
      • meanTheta

        public float[][] meanTheta
      • devR

        public float[][] devR
      • devTheta

        public float[][] devTheta
      • totalScore

        public float[] totalScore
      • rsNames

        public String[] rsNames
      • manifestName

        public String manifestName
      • numCodes

        public int numCodes