Package picard.metrics
Class SAMRecordAndReferenceMultiLevelCollector<BEAN extends htsjdk.samtools.metrics.MetricBase,HKEY extends Comparable>
- java.lang.Object
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- picard.metrics.MultiLevelCollector<BEAN,HKEY,SAMRecordAndReference>
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- picard.metrics.SAMRecordAndReferenceMultiLevelCollector<BEAN,HKEY>
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- Direct Known Subclasses:
AlignmentSummaryMetricsCollector
,RrbsMetricsCollector
public abstract class SAMRecordAndReferenceMultiLevelCollector<BEAN extends htsjdk.samtools.metrics.MetricBase,HKEY extends Comparable> extends MultiLevelCollector<BEAN,HKEY,SAMRecordAndReference>
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Field Summary
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Fields inherited from class picard.metrics.MultiLevelCollector
UNKNOWN
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Constructor Summary
Constructors Constructor Description SAMRecordAndReferenceMultiLevelCollector()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description protected SAMRecordAndReference
makeArg(htsjdk.samtools.SAMRecord samRec, htsjdk.samtools.reference.ReferenceSequence refSeq)
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Methods inherited from class picard.metrics.MultiLevelCollector
acceptRecord, addAllLevelsToFile, finish, getAllReadsCollector, makeAllReadCollector, makeChildCollector, makeLibraryCollector, makeReadGroupCollector, makeSampleCollector, setup
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Method Detail
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makeArg
protected SAMRecordAndReference makeArg(htsjdk.samtools.SAMRecord samRec, htsjdk.samtools.reference.ReferenceSequence refSeq)
- Specified by:
makeArg
in classMultiLevelCollector<BEAN extends htsjdk.samtools.metrics.MetricBase,HKEY extends Comparable,SAMRecordAndReference>
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