Class CompareGtcFiles


  • public class CompareGtcFiles
    extends CommandLineProgram
    A simple tool to compare two Illumina GTC files.
    • Field Detail

      • INPUT

        @Argument(shortName="I",
                  doc="GTC input files to compare.",
                  minElements=2,
                  maxElements=2)
        public List<File> INPUT
      • ILLUMINA_NORMALIZATION_MANIFEST

        @Argument(shortName="NORM_MANIFEST",
                  doc="An Illumina bead pool manifest (a manifest containing the Illumina normalization ids) (bpm.csv)")
        public File ILLUMINA_NORMALIZATION_MANIFEST
    • Constructor Detail

      • CompareGtcFiles

        public CompareGtcFiles()
    • Method Detail

      • doWork

        protected int doWork()
        Description copied from class: CommandLineProgram
        Do the work after command line has been parsed. RuntimeException may be thrown by this method, and are reported appropriately.
        Specified by:
        doWork in class CommandLineProgram
        Returns:
        program exit status.