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OpenMS
2.4.0
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58 static std::map<String, UInt>
months;
62 std::vector< PeptideIdentification > & pep_ids,
63 std::vector< ProteinIdentification > & prot_ids
68 const std::vector<PeptideIdentification>& pep_id,
76 void endElement(
const XMLCh *
const uri,
const XMLCh *
const local_name,
const XMLCh *
const qname)
override;
79 void startElement(
const XMLCh *
const uri,
const XMLCh *
const local_name,
const XMLCh *
const qname,
const xercesc::Attributes & attributes)
override;
85 double getMinScore()
const;
91 double getMaxScore()
const;
97 UInt getNumberOfHits()
const;
100 virtual void writeTo(std::ostream& os)
override;
140 const std::vector<ProteinIdentification>*
cpro_id_;
141 const std::vector<PeptideIdentification>*
cpep_id_;
186 inline void extractDateTime_(
const String & xquest_datetime_string,
DateTime & date_time);
201 void getLinkPosition_(
const xercesc::Attributes & attributes, std::pair<SignedSize, SignedSize> & pair);
std::vector< PeptideIdentification > current_spectrum_search_
Definition: XQuestResultXMLHandler.h:176
int spectrum_index_heavy_
Definition: XQuestResultXMLHandler.h:133
Base class for XML handlers.
Definition: XMLHandler.h:148
StringList ms_run_path_
Definition: XQuestResultXMLHandler.h:172
UInt min_precursor_charge_
Definition: XQuestResultXMLHandler.h:160
A more convenient string class.
Definition: String.h:57
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127
double min_score_
Definition: XQuestResultXMLHandler.h:146
double rt_light_
Definition: XQuestResultXMLHandler.h:164
Database for enzymes that digest proteins (proteases)
Definition: ProteaseDB.h:52
String spectrum_input_file_
Definition: XQuestResultXMLHandler.h:173
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
double rt_heavy_
Definition: XQuestResultXMLHandler.h:165
int spectrum_index_light_
Definition: XQuestResultXMLHandler.h:132
double mz_light_
Definition: XQuestResultXMLHandler.h:168
const std::vector< ProteinIdentification > * cpro_id_
Definition: XQuestResultXMLHandler.h:140
std::map< String, DataValue > peptide_id_meta_values_
Definition: XQuestResultXMLHandler.h:179
double max_score_
Definition: XQuestResultXMLHandler.h:147
std::set< UInt > charges_
Definition: XQuestResultXMLHandler.h:159
UInt max_precursor_charge_
Definition: XQuestResultXMLHandler.h:161
static std::map< String, UInt > months
Definition: XQuestResultXMLHandler.h:58
std::vector< String > StringList
Vector of String.
Definition: ListUtils.h:73
unsigned int UInt
Unsigned integer type.
Definition: Types.h:94
static std::map< Size, String > enzymes
Definition: XQuestResultXMLHandler.h:55
std::vector< ProteinIdentification > * prot_ids_
Definition: XQuestResultXMLHandler.h:137
UInt n_hits_
Definition: XQuestResultXMLHandler.h:143
XMLHandler for the result files of XQuest.
Definition: XQuestResultXMLHandler.h:49
bool is_openpepxl_
Definition: XQuestResultXMLHandler.h:150
std::set< String > accessions_
Definition: XQuestResultXMLHandler.h:153
ProteaseDB * enzymes_db_
Definition: XQuestResultXMLHandler.h:156
double mz_heavy_
Definition: XQuestResultXMLHandler.h:169
String decoy_string_
Definition: XQuestResultXMLHandler.h:131
const std::vector< PeptideIdentification > * cpep_id_
Definition: XQuestResultXMLHandler.h:141
std::vector< PeptideIdentification > * pep_ids_
Definition: XQuestResultXMLHandler.h:136
DateTime Class.
Definition: DateTime.h:54
Representation of a peptide hit.
Definition: PeptideHit.h:54