Package htsjdk.samtools.sra
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Class Summary Class Description ReferenceCache That is a thread-safe wrapper for a list of cache Reference objects.SRAAccession Describes a single SRA accession for SRA read collection Also provides app string functionality and allows to check if working SRA is supported on the running platform Important: due to checks performed in SRAAccession.isValid(), we won't recognise any accessions other than ones that follow the pattern "^[SED]RR[0-9]{6,9}$", e.g.SRAAlignmentIterator Iterator for aligned reads.SRAIndexedSequenceFile Allows reading Reference data from SRASRALazyRecord Extends SAMRecord so that any of the fields will be loaded only when needed.SRAUnalignmentIterator Iterator for unaligned reads.SRAUtils Provides some functionality which can be used by other classes Created by andrii.nikitiuk on 10/28/15.