Class SimpleFeature

    • Constructor Detail

      • SimpleFeature

        public SimpleFeature​(String contig,
                             int start,
                             int end)
    • Method Detail

      • getContig

        public String getContig()
        Description copied from interface: Locatable
        Gets the contig name for the contig this is mapped to. May return null if there is no unique mapping.
        Specified by:
        getContig in interface Locatable
        Returns:
        name of the contig this is mapped to, potentially null
      • getStart

        public int getStart()
        Specified by:
        getStart in interface Locatable
        Returns:
        1-based start position, undefined if getContig() == null
      • getEnd

        public int getEnd()
        Specified by:
        getEnd in interface Locatable
        Returns:
        1-based closed-ended position, undefined if getContig() == null