Package htsjdk.samtools.util
Class IntervalCoordinateComparator
- java.lang.Object
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- htsjdk.samtools.util.IntervalCoordinateComparator
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- All Implemented Interfaces:
Serializable
,Comparator<Interval>
public class IntervalCoordinateComparator extends Object implements Comparator<Interval>, Serializable
Comparator that orders intervals based on their sequence index, by coordinate then by strand and finally by name.- See Also:
- Serialized Form
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Constructor Summary
Constructors Constructor Description IntervalCoordinateComparator(SAMFileHeader header)
Constructs a comparator using the supplied sequence header.
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description int
compare(Interval lhs, Interval rhs)
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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Methods inherited from interface java.util.Comparator
equals, reversed, thenComparing, thenComparing, thenComparing, thenComparingDouble, thenComparingInt, thenComparingLong
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Constructor Detail
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IntervalCoordinateComparator
public IntervalCoordinateComparator(SAMFileHeader header)
Constructs a comparator using the supplied sequence header.
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Method Detail
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compare
public int compare(Interval lhs, Interval rhs)
- Specified by:
compare
in interfaceComparator<Interval>
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