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3d/register.hh
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1/* -*- mia-c++ -*-
2 *
3 * This file is part of MIA - a toolbox for medical image analysis
4 * Copyright (c) Leipzig, Madrid 1999-2017 Gert Wollny
5 *
6 * MIA is free software; you can redistribute it and/or modify
7 * it under the terms of the GNU General Public License as published by
8 * the Free Software Foundation; either version 3 of the License, or
9 * (at your option) any later version.
10 *
11 * This program is distributed in the hope that it will be useful,
12 * but WITHOUT ANY WARRANTY; without even the implied warranty of
13 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14 * GNU General Public License for more details.
15 *
16 * You should have received a copy of the GNU General Public License
17 * along with MIA; if not, see <http://www.gnu.org/licenses/>.
18 *
19 */
20
21#ifndef reg3d_register_hh
22#define reg3d_register_hh
23
24#include <mia/3d/deformer.hh>
25#include <mia/3d/model.hh>
26#include <mia/3d/timestep.hh>
27#include <mia/3d/cost.hh>
28
29
31
32typedef std::shared_ptr< C3DFVectorfield > P3DFVectorfield;
33
44typedef std::shared_ptr<C3DImageCost > P3DImageCost;
45
47{
48public:
63 C3DImageRegister(size_t start_size, C3DImageCost& cost, size_t max_iter,
64 C3DRegModel& model, C3DRegTimeStep& time_step,
65 const C3DInterpolatorFactory& ipf, float outer_epsilon, bool save_steps);
66
73 P3DFVectorfield operator () (const C3DImage& source, const C3DImage& reference);
74private:
75 void reg_level(const C3DImage& source, const C3DImage& reference, C3DFVectorfield& result);
76 void reg_level_regrid(const C3DImage& source, const C3DImage& reference, C3DFVectorfield& result);
77 void reg_level_regrid_opt(const C3DImage& source, const C3DImage& reference, C3DFVectorfield& result);
78 size_t m_start_size;
79 C3DImageCost& m_cost;
80 size_t m_max_iter;
81 C3DRegModel& m_model;
82 C3DRegTimeStep& m_time_step;
83 const C3DInterpolatorFactory& m_ipf;
84 float m_outer_epsilon;
85 bool m_save_steps;
86 size_t m_mnum;
87};
88
89typedef std::shared_ptr<C3DRegModel > P3DRegModel;
90
92
93#endif
std::shared_ptr< C3DFVectorfield > P3DFVectorfield
Definition: 3d/register.hh:32
std::shared_ptr< C3DRegModel > P3DRegModel
Definition: 3d/register.hh:89
a 3D field of floating point single accuracy 3D vectors
C3DImageRegister(size_t start_size, C3DImageCost &cost, size_t max_iter, C3DRegModel &model, C3DRegTimeStep &time_step, const C3DInterpolatorFactory &ipf, float outer_epsilon, bool save_steps)
The generic base type of a 3D image.
Definition: 3d/image.hh:47
A factory to create interpolators of a given type by providing input data.
The time-step part of time-marching registration algorithms.
Definition: 3d/timestep.hh:39
The generic cost function interface.
Definition: core/cost.hh:65
#define EXPORT_3D
Definition: defines3d.hh:45
#define NS_MIA_BEGIN
conveniance define to start the mia namespace
Definition: defines.hh:33
#define NS_MIA_END
conveniance define to end the mia namespace
Definition: defines.hh:36
std::shared_ptr< C3DFVectorfield > P3DFVectorfield
pointer type for a 3D vector field
Definition: multireg.hh:36
std::shared_ptr< C3DImageCost > P3DImageCost
A 3D non-rigid image registration class.
Definition: 3d/register.hh:44